Wall clock time and date at job start Sun Mar 29 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47294 * 2 1 4 4 C 1.34945 * 126.03971 * 125.25956 * 3 2 1 5 5 C 1.35323 * 107.74455 * 180.14748 * 4 3 2 6 6 C 1.50696 * 126.03784 * 179.87367 * 5 4 3 7 7 N 1.46501 * 109.47033 * 274.46846 * 6 5 4 8 8 C 1.36939 * 120.00135 * 95.80312 * 7 6 5 9 9 H 1.08000 * 120.00061 * 216.36182 * 8 7 6 10 10 C 1.38812 * 119.99776 * 36.36784 * 8 7 6 11 11 N 1.31616 * 119.99992 * 213.24496 * 10 8 7 12 12 Si 1.86810 * 120.00089 * 33.24369 * 10 8 7 13 13 H 1.48500 * 109.46788 * 89.96307 * 12 10 8 14 14 H 1.48500 * 109.46660 * 209.96434 * 12 10 8 15 15 H 1.48494 * 109.46751 * 329.96272 * 12 10 8 16 16 C 1.46500 * 119.99985 * 275.80347 * 7 6 5 17 17 C 1.53000 * 109.47278 * 270.52883 * 16 7 6 18 18 O 1.42899 * 109.47147 * 64.83390 * 17 16 7 19 19 C 1.39870 * 107.91979 * 359.60912 * 5 4 3 20 20 N 1.30834 * 108.20401 * 0.24298 * 19 5 4 21 21 H 1.09009 * 109.47619 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47733 * 300.00523 * 1 2 3 23 23 H 1.09003 * 109.47304 * 60.00740 * 1 2 3 24 24 H 1.08996 * 109.47166 * 239.99563 * 2 1 3 25 25 H 1.09007 * 109.46693 * 119.99619 * 2 1 3 26 26 H 1.07997 * 126.12892 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.47394 * 154.47074 * 6 5 4 28 28 H 1.09000 * 109.47637 * 34.47022 * 6 5 4 29 29 H 0.97003 * 119.99955 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.47280 * 150.53023 * 16 7 6 31 31 H 1.09001 * 109.47462 * 30.53470 * 16 7 6 32 32 H 1.09001 * 109.46961 * 184.83286 * 17 16 7 33 33 H 1.08997 * 109.47032 * 304.82972 * 17 16 7 34 34 H 0.96701 * 114.00166 * 180.02562 * 18 17 16 35 35 H 1.07995 * 125.89885 * 180.22317 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8768 1.9197 0.8910 5 6 3.0714 3.2137 0.5461 6 6 3.9548 4.1999 1.2658 7 7 3.2060 4.8149 2.3646 8 6 3.3156 4.3120 3.6336 9 1 2.4541 4.2968 4.2847 10 6 4.5341 3.8221 4.0831 11 7 4.5666 2.8117 4.9259 12 14 6.1278 4.5969 3.4919 13 1 6.5130 5.6985 4.4102 14 1 7.2003 3.5699 3.4734 15 1 5.9368 5.1379 2.1223 16 6 2.3399 5.9677 2.1058 17 6 3.1482 7.2576 2.2594 18 8 4.1610 7.3079 1.2526 19 6 2.3125 3.4723 -0.6000 20 7 1.6808 2.3746 -0.9283 21 1 -0.3635 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.3258 1.4102 1.7307 27 1 4.2787 4.9733 0.5693 28 1 4.8269 3.6824 1.6653 29 1 5.4181 2.4691 5.2397 30 1 1.5145 5.9693 2.8178 31 1 1.9448 5.9051 1.0919 32 1 2.4858 8.1165 2.1516 33 1 3.6139 7.2794 3.2447 34 1 4.7137 8.1005 1.2898 35 1 2.2572 4.4154 -1.1234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361342320.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:03 Heat of formation + Delta-G solvation = 54.617358 kcal Electronic energy + Delta-G solvation = -17599.908949 eV Core-core repulsion = 14828.941645 eV Total energy + Delta-G solvation = -2770.967304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46765 -36.82980 -35.06412 -33.91648 -31.63002 -30.18944 -29.53808 -27.86324 -25.14793 -23.37956 -23.14468 -20.40952 -19.92411 -19.39493 -17.13406 -16.56603 -16.01658 -15.12402 -14.82295 -14.75131 -13.83500 -13.66871 -13.36040 -12.92257 -12.71086 -12.68533 -12.22254 -12.02599 -11.94902 -11.83211 -11.28368 -10.95984 -10.70160 -10.51541 -10.35865 -10.28205 -9.70395 -9.43171 -9.20429 -8.74412 -8.38289 -7.60408 -6.72400 -6.02025 -3.26968 2.57975 3.08374 3.43688 3.55168 3.59539 3.69742 4.64458 4.82503 4.99320 5.13999 5.22153 5.30770 5.41305 5.53686 5.63390 5.77304 5.90332 6.01158 6.14404 6.16422 6.19813 6.34267 6.41210 6.62251 6.68321 6.81774 7.05749 7.14905 7.39340 7.73038 8.09611 8.23193 8.36759 8.44793 9.09881 9.80582 10.28120 11.13633 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.008969 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.208109 B = 3121.126619 C = 3799.733060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 N -0.384 5.384 4 C 0.069 3.931 5 C -0.232 4.232 6 C 0.222 3.778 7 N -0.588 5.588 8 C -0.271 4.271 9 H 0.071 0.929 10 C 0.045 3.955 11 N -0.887 5.887 12 Si 0.842 3.158 13 H -0.295 1.295 14 H -0.299 1.299 15 H -0.245 1.245 16 C 0.151 3.849 17 C 0.052 3.948 18 O -0.565 6.565 19 C 0.047 3.953 20 N -0.317 5.317 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.171 0.829 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.044 0.956 34 H 0.360 0.640 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 0.046 -8.467 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 N -0.168 5.168 4 C -0.076 4.076 5 C -0.245 4.245 6 C 0.096 3.904 7 N -0.309 5.309 8 C -0.399 4.399 9 H 0.088 0.912 10 C -0.157 4.157 11 N -0.527 5.527 12 Si 0.669 3.331 13 H -0.223 1.223 14 H -0.226 1.226 15 H -0.169 1.169 16 C 0.024 3.976 17 C -0.028 4.028 18 O -0.368 6.368 19 C -0.139 4.139 20 N -0.139 5.139 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.188 0.812 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.205 0.795 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.865 -1.365 -9.322 10.604 hybrid contribution 1.769 1.333 0.848 2.371 sum -3.096 -0.033 -8.475 9.023 Atomic orbital electron populations 1.22029 0.94430 1.02117 1.03446 1.21502 0.95605 0.78568 1.03007 1.48561 1.36578 1.09596 1.22107 1.22461 0.94717 0.95261 0.95147 1.21298 1.08251 0.95615 0.99324 1.19555 0.91022 0.91507 0.88349 1.44023 1.52833 1.29747 1.04261 1.18683 0.94503 1.36539 0.90164 0.91154 1.25417 0.97577 0.96684 0.96005 1.70062 1.26018 1.21330 1.35279 0.87450 0.84759 0.80160 0.80724 1.22262 1.22646 1.16902 1.20934 0.92507 0.85249 0.98922 1.23115 0.89923 0.98958 0.90781 1.86568 1.48714 1.46124 1.55378 1.23675 0.96470 0.96794 0.96961 1.77088 1.24719 0.97393 1.14657 0.91349 0.92039 0.91469 0.90730 0.89001 0.81178 0.92693 0.92666 0.92936 0.92056 0.93611 0.95706 0.93727 0.79543 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.10 37.15 0.38 -1.58 16 2 C 0.13 1.79 7.23 -4.05 -0.03 1.76 16 3 N -0.38 -6.88 3.68 -61.37 -0.23 -7.11 16 4 C 0.07 1.39 11.36 -17.22 -0.20 1.20 16 5 C -0.23 -4.83 5.67 -105.05 -0.60 -5.43 16 6 C 0.22 5.01 4.18 -5.19 -0.02 4.99 16 7 N -0.59 -13.89 2.02 -174.61 -0.35 -14.24 16 8 C -0.27 -7.38 9.80 -15.06 -0.15 -7.52 16 9 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 10 C 0.04 1.25 5.02 -17.43 -0.09 1.16 16 11 N -0.89 -26.14 13.97 55.49 0.78 -25.37 16 12 Si 0.84 21.32 26.40 -169.99 -4.49 16.83 16 13 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 14 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.25 -6.00 5.66 56.52 0.32 -5.68 16 16 C 0.15 3.04 6.10 -4.04 -0.02 3.02 16 17 C 0.05 0.94 7.39 37.16 0.27 1.22 16 18 O -0.56 -10.12 12.35 -35.23 -0.43 -10.55 16 19 C 0.05 0.89 11.96 -17.37 -0.21 0.69 16 20 N -0.32 -6.02 12.42 30.62 0.38 -5.64 16 21 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.09 1.07 8.07 -51.92 -0.42 0.65 16 26 H 0.17 3.45 8.06 -52.49 -0.42 3.02 16 27 H 0.05 1.21 6.96 -51.93 -0.36 0.85 16 28 H 0.06 1.34 4.47 -51.93 -0.23 1.11 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 31 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.36 4.75 9.12 45.56 0.42 5.16 16 35 H 0.17 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -32.30 295.57 -5.01 -37.31 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.46 Total: 4.82 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.66 Total: -0.50 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.58 Total: -52.36 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.43 Total: -10.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.49 Total: 16.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.30 -5.01 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361342320.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.927 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds