Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47231 * 89.99406 * 8 6 4 10 10 H 1.48500 * 109.47013 * 209.99751 * 8 6 4 11 11 H 1.48498 * 109.46665 * 329.99226 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 H 1.08994 * 115.56299 * 325.57977 * 15 13 12 17 17 C 1.53183 * 117.52091 * 111.35666 * 15 13 12 18 18 C 1.52106 * 117.51630 * 179.80272 * 15 13 12 19 19 C 1.53710 * 121.74392 * 3.68081 * 18 15 13 20 20 C 1.54692 * 103.69802 * 143.45974 * 19 18 15 21 21 O 1.44499 * 104.86757 * 23.85108 * 20 19 18 22 22 C 1.44643 * 105.46188 * 320.01844 * 21 20 19 23 23 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 28 28 H 1.08992 * 117.52516 * 214.84311 * 17 15 13 29 29 H 1.09006 * 117.52137 * 359.95004 * 17 15 13 30 30 H 1.08998 * 110.58078 * 262.02249 * 19 18 15 31 31 H 1.09006 * 110.57495 * 24.75933 * 19 18 15 32 32 H 1.09002 * 110.36174 * 142.69476 * 20 19 18 33 33 H 1.09000 * 110.36741 * 265.00398 * 20 19 18 34 34 H 1.09002 * 110.41722 * 280.87938 * 22 21 20 35 35 H 1.08995 * 110.41389 * 158.42388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 1 2.3501 -1.7727 3.6828 17 6 4.0326 -0.3377 4.1161 18 6 2.7767 0.0851 4.8663 19 6 2.3330 1.5551 4.9369 20 6 1.7421 1.6914 6.3600 21 8 2.3702 0.6384 7.1246 22 6 2.4186 -0.5046 6.2396 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.7081 1.1610 -3.4844 27 1 2.2491 -1.6317 1.1525 28 1 4.6432 -1.1241 4.5595 29 1 4.5798 0.4329 3.5730 30 1 3.1876 2.2198 4.8114 31 1 1.5737 1.7627 4.1828 32 1 1.9896 2.6656 6.7817 33 1 0.6615 1.5507 6.3372 34 1 1.4468 -0.9967 6.2005 35 1 3.1877 -1.2050 6.5649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364108644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = -60.792204 kcal Electronic energy + Delta-G solvation = -17227.616817 eV Core-core repulsion = 14419.352228 eV Total energy + Delta-G solvation = -2808.264589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22483 -38.41171 -35.77673 -34.62458 -32.40225 -30.20632 -29.05668 -27.29970 -25.29320 -23.94934 -22.61025 -20.96247 -19.65710 -19.23976 -17.06373 -16.24645 -15.99660 -15.45194 -15.19408 -15.08300 -14.44235 -14.05620 -13.49511 -13.15803 -12.62412 -12.44422 -12.41471 -12.08706 -11.77173 -11.28659 -11.11726 -10.98602 -10.91420 -10.68430 -10.33855 -10.28163 -10.23723 -9.87396 -9.72219 -9.07351 -8.80089 -8.55920 -7.94042 -6.14778 -4.24243 3.06479 3.22653 3.29561 3.31685 3.79777 3.92172 4.08475 4.32456 4.68492 4.77205 4.94715 4.99687 5.17627 5.25829 5.46475 5.48229 5.55160 5.63965 5.71080 5.77591 5.90230 6.05519 6.17755 6.52086 6.78845 6.81757 6.95035 7.12114 7.44741 7.54036 7.67117 7.88861 8.12446 8.64576 8.75700 9.11132 9.43666 10.91174 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.053675 B = 0.005043 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.537718 B = 5550.859455 C = 5801.339943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.703 5.703 13 C 0.530 3.470 14 O -0.550 6.550 15 C -0.171 4.171 16 H 0.120 0.880 17 C -0.135 4.135 18 C -0.132 4.132 19 C -0.129 4.129 20 C 0.044 3.956 21 O -0.379 6.379 22 C 0.083 3.917 23 H 0.090 0.910 24 H 0.026 0.974 25 H 0.014 0.986 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -3.580 13.207 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.315 3.685 14 O -0.430 6.430 15 C -0.192 4.192 16 H 0.138 0.862 17 C -0.173 4.173 18 C -0.133 4.133 19 C -0.166 4.166 20 C -0.032 4.032 21 O -0.298 6.298 22 C 0.007 3.993 23 H 0.109 0.891 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.637 -2.592 13.272 13.778 hybrid contribution 0.314 -1.065 -1.214 1.646 sum 2.951 -3.657 12.058 12.941 Atomic orbital electron populations 1.22076 0.98448 0.99112 1.00896 1.18752 0.91018 0.93976 0.80006 0.93391 1.21217 1.32475 1.13231 0.90334 0.92080 1.24889 0.94803 0.94930 0.99073 1.69902 1.35863 1.22449 1.23906 0.86443 0.79174 0.79281 0.82179 1.20527 1.21044 1.19849 1.46506 1.64507 1.13621 1.10358 1.19471 0.78327 0.86865 0.83810 1.90528 1.51906 1.16191 1.84405 1.22271 1.02533 1.00251 0.94147 0.86198 1.22936 0.89305 1.03229 1.01791 1.22097 1.02310 0.96785 0.92143 1.22723 1.03316 0.92968 0.97584 1.23541 0.96876 0.91524 0.91304 1.89112 1.81441 1.22245 1.36975 1.22772 1.01014 0.89047 0.86511 0.89143 0.95493 0.96661 0.92557 0.77852 0.87886 0.87979 0.90899 0.86209 0.89346 0.92365 0.91756 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.66 2.56 -69.09 -0.18 6.48 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.70 -14.44 5.07 -54.93 -0.28 -14.72 16 13 C 0.53 10.30 7.58 -10.98 -0.08 10.21 16 14 O -0.55 -12.46 13.00 5.56 0.07 -12.39 16 15 C -0.17 -2.45 6.08 -92.13 -0.56 -3.01 16 16 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 17 C -0.14 -1.71 10.01 -27.01 -0.27 -1.98 16 18 C -0.13 -1.80 2.51 -154.61 -0.39 -2.18 16 19 C -0.13 -1.89 5.99 -25.47 -0.15 -2.05 16 20 C 0.04 0.56 7.65 38.05 0.29 0.85 16 21 O -0.38 -5.18 11.65 -35.23 -0.41 -5.60 16 22 C 0.08 0.99 7.44 37.51 0.28 1.27 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.12 2.09 5.43 -51.93 -0.28 1.81 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -29.93 290.06 -6.86 -36.79 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.11 Total: 6.60 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.11 Total: -6.38 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.34 Total: -17.98 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.93 -6.86 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.006 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds