Wall clock time and date at job start Sun Mar 29 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47231 * 89.99406 * 8 6 4 10 10 H 1.48500 * 109.47013 * 209.99751 * 8 6 4 11 11 H 1.48498 * 109.46665 * 329.99226 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 H 1.08994 * 115.56299 * 325.57977 * 15 13 12 17 17 C 1.53183 * 117.52091 * 111.35666 * 15 13 12 18 18 C 1.52106 * 117.51630 * 179.80272 * 15 13 12 19 19 C 1.53710 * 121.74392 * 3.68081 * 18 15 13 20 20 C 1.54692 * 103.69802 * 143.45974 * 19 18 15 21 21 O 1.44499 * 104.86757 * 23.85108 * 20 19 18 22 22 C 1.44643 * 105.46188 * 320.01844 * 21 20 19 23 23 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 28 28 H 1.08992 * 117.52516 * 214.84311 * 17 15 13 29 29 H 1.09006 * 117.52137 * 359.95004 * 17 15 13 30 30 H 1.08998 * 110.58078 * 262.02249 * 19 18 15 31 31 H 1.09006 * 110.57495 * 24.75933 * 19 18 15 32 32 H 1.09002 * 110.36174 * 142.69476 * 20 19 18 33 33 H 1.09000 * 110.36741 * 265.00398 * 20 19 18 34 34 H 1.09002 * 110.41722 * 280.87938 * 22 21 20 35 35 H 1.08995 * 110.41389 * 158.42388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 1 2.3501 -1.7727 3.6828 17 6 4.0326 -0.3377 4.1161 18 6 2.7767 0.0851 4.8663 19 6 2.3330 1.5551 4.9369 20 6 1.7421 1.6914 6.3600 21 8 2.3702 0.6384 7.1246 22 6 2.4186 -0.5046 6.2396 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.7081 1.1610 -3.4844 27 1 2.2491 -1.6317 1.1525 28 1 4.6432 -1.1241 4.5595 29 1 4.5798 0.4329 3.5730 30 1 3.1876 2.2198 4.8114 31 1 1.5737 1.7627 4.1828 32 1 1.9896 2.6656 6.7817 33 1 0.6615 1.5507 6.3372 34 1 1.4468 -0.9967 6.2005 35 1 3.1877 -1.2050 6.5649 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364108644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:01 Heat of formation + Delta-G solvation = -81.310630 kcal Electronic energy + Delta-G solvation = -17228.506563 eV Core-core repulsion = 14419.352228 eV Total energy + Delta-G solvation = -2809.154335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.45924 -39.79137 -37.13850 -36.29913 -34.31956 -31.43130 -30.80614 -28.33394 -27.35860 -25.33110 -23.64269 -22.62717 -21.21894 -20.53612 -18.73940 -17.64089 -17.23747 -16.92822 -16.72234 -16.14001 -16.06257 -15.56912 -14.98194 -14.57786 -14.37689 -13.78452 -13.70882 -13.48917 -13.09625 -13.00782 -12.89285 -12.75113 -12.32319 -12.28179 -12.13431 -11.88495 -11.40298 -11.12075 -10.99083 -10.72429 -10.63144 -10.26612 -9.73907 -8.18696 -6.36436 1.44574 1.45297 1.55913 1.65332 2.31990 2.53930 2.74065 3.06055 3.11960 3.54261 3.68728 3.81709 3.99019 4.18961 4.25643 4.47326 4.54791 4.70461 4.73081 4.79029 4.82853 4.87207 4.91601 5.01943 5.05778 5.08258 5.30340 5.44491 5.62112 5.69354 5.81659 5.90914 6.09524 6.71886 6.98301 7.31890 7.58085 8.87579 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.053675 B = 0.005043 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.537718 B = 5550.859455 C = 5801.339943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.702 5.702 13 C 0.522 3.478 14 O -0.590 6.590 15 C -0.172 4.172 16 H 0.156 0.844 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.134 4.134 20 C 0.049 3.951 21 O -0.391 6.391 22 C 0.086 3.914 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.012 0.988 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 -5.986 14.246 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.350 5.350 13 C 0.310 3.690 14 O -0.472 6.472 15 C -0.193 4.193 16 H 0.173 0.827 17 C -0.157 4.157 18 C -0.139 4.139 19 C -0.172 4.172 20 C -0.027 4.027 21 O -0.310 6.310 22 C 0.010 3.990 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.161 0.839 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.727 -5.032 14.340 15.647 hybrid contribution -0.028 -0.232 -1.511 1.529 sum 3.699 -5.264 12.829 14.352 Atomic orbital electron populations 1.21890 0.98350 0.99420 0.99505 1.18323 0.91056 0.91855 0.82025 0.98522 1.21549 1.32592 1.13553 0.90821 0.90868 1.25811 0.94862 0.95550 1.02376 1.70055 1.37031 1.23978 1.24618 0.85329 0.79000 0.78022 0.77890 1.19601 1.21272 1.18780 1.46264 1.64852 1.14284 1.09576 1.20394 0.77214 0.86592 0.84821 1.90536 1.53227 1.18257 1.85184 1.22208 1.04137 1.01370 0.91608 0.82690 1.23087 0.88689 1.03484 1.00429 1.22229 1.02902 0.95882 0.92854 1.22629 1.02156 0.94246 0.98120 1.23523 0.97005 0.92295 0.89893 1.89100 1.81531 1.22884 1.37499 1.22942 1.02589 0.88721 0.84758 0.91587 0.94111 0.96936 0.92553 0.75998 0.83872 0.89782 0.91775 0.89485 0.87929 0.91845 0.90743 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.08 16 2 C 0.27 14.03 2.56 44.25 0.11 14.14 16 3 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 4 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.46 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.70 -28.76 5.07 -446.11 -2.26 -31.02 16 13 C 0.52 20.34 7.58 87.66 0.66 21.00 16 14 O -0.59 -27.86 13.00 -3.01 -0.04 -27.90 16 15 C -0.17 -4.56 6.08 -11.77 -0.07 -4.63 16 16 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 17 C -0.12 -2.70 10.01 30.42 0.30 -2.40 16 18 C -0.14 -3.46 2.51 -52.25 -0.13 -3.59 16 19 C -0.13 -3.95 5.99 31.41 0.19 -3.76 16 20 C 0.05 1.19 7.65 72.56 0.56 1.75 16 21 O -0.39 -9.73 11.65 -148.98 -1.74 -11.46 16 22 C 0.09 1.74 7.44 72.21 0.54 2.28 16 23 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 27 H 0.40 13.85 8.54 -92.71 -0.79 13.06 16 28 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 3.19 5.43 -2.38 -0.01 3.17 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.75 8.12 -2.39 -0.02 1.73 16 Total: -1.00 -66.79 290.06 2.03 -64.77 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.30 Total: 23.04 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 3.50 Total: -8.70 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.02 Total: -83.49 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.78 Total: -39.37 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.79 2.03 -64.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.544 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds