Wall clock time and date at job start Sun Mar 29 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47714 * 2 1 4 4 C 1.50707 * 109.47356 * 239.99789 * 2 1 3 5 5 H 1.07997 * 120.00053 * 240.00352 * 4 2 1 6 6 C 1.37876 * 119.99834 * 59.99731 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47170 * 60.00587 * 8 6 4 10 10 H 1.48503 * 109.46907 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47216 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.47390 * 119.99958 * 2 1 3 13 13 C 1.34779 * 120.00246 * 275.00231 * 12 2 1 14 14 O 1.21280 * 119.99443 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00165 * 179.97438 * 13 12 2 16 16 H 1.08996 * 115.57380 * 325.84160 * 15 13 12 17 17 C 1.53297 * 117.53396 * 111.78913 * 15 13 12 18 18 C 1.51576 * 117.53442 * 179.97438 * 15 13 12 19 19 C 1.54255 * 122.63264 * 140.67944 * 18 15 13 20 20 C 1.54637 * 102.04432 * 184.28970 * 19 18 15 21 21 O 1.43344 * 107.68648 * 20.10427 * 20 19 18 22 22 C 1.43929 * 110.12095 * 1.51370 * 21 20 19 23 23 H 1.08998 * 109.47330 * 299.99922 * 1 2 3 24 24 H 1.09003 * 109.47507 * 59.99824 * 1 2 3 25 25 H 1.09004 * 109.47699 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00182 * 180.02562 * 7 6 4 27 27 H 0.97007 * 119.99913 * 94.99313 * 12 2 1 28 28 H 1.09000 * 117.53495 * 0.02562 * 17 15 13 29 29 H 1.08996 * 117.53669 * 214.76356 * 17 15 13 30 30 H 1.09005 * 110.90425 * 66.10631 * 19 18 15 31 31 H 1.08994 * 110.91792 * 302.48476 * 19 18 15 32 32 H 1.08992 * 109.81483 * 260.56114 * 20 19 18 33 33 H 1.08999 * 109.81009 * 139.64207 * 20 19 18 34 34 H 1.09002 * 110.34546 * 96.04414 * 22 21 20 35 35 H 1.09003 * 110.34710 * 218.20526 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8268 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 2.3537 -1.7739 3.6809 17 6 4.0292 -0.3305 4.1226 18 6 2.7726 0.0811 4.8630 19 6 2.4019 -0.4870 6.2484 20 6 2.5965 0.7436 7.1644 21 8 2.5531 1.9134 6.3371 22 6 2.3113 1.5427 4.9676 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0277 0.0005 26 1 0.7088 1.1612 -3.4844 27 1 2.2489 -1.6318 1.1526 28 1 4.5734 0.4456 3.5845 29 1 4.6425 -1.1140 4.5676 30 1 3.0780 -1.2938 6.5316 31 1 1.3659 -0.8252 6.2658 32 1 3.5620 0.6816 7.6663 33 1 1.7965 0.7840 7.9036 34 1 1.2493 1.6225 4.7352 35 1 2.8940 2.1730 4.2957 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364108645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:03 Heat of formation + Delta-G solvation = -63.916572 kcal Electronic energy + Delta-G solvation = -17207.780671 eV Core-core repulsion = 14399.380599 eV Total energy + Delta-G solvation = -2808.400072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25159 -38.40673 -35.78442 -34.63153 -32.37707 -30.47080 -29.06766 -27.32702 -25.28354 -24.02169 -22.46519 -20.96562 -19.73847 -19.24313 -17.13744 -16.16580 -16.05992 -15.65753 -15.18314 -14.84458 -14.52605 -13.77797 -13.73411 -13.13818 -12.78335 -12.42411 -12.39591 -12.01482 -11.71460 -11.52269 -11.11574 -11.01056 -10.95604 -10.81458 -10.35480 -10.30893 -10.23954 -9.99841 -9.37277 -9.07847 -8.98450 -8.56223 -7.93424 -6.13658 -4.23292 3.03124 3.24529 3.29887 3.30848 3.67240 3.98523 4.13788 4.31032 4.43886 4.76945 4.85750 4.93528 5.10580 5.18555 5.38316 5.44461 5.51816 5.62986 5.73989 5.82857 5.88165 6.02166 6.07399 6.30501 6.80637 6.94845 7.09085 7.13111 7.43801 7.54172 7.67761 7.89595 8.13251 8.64664 8.76031 9.10106 9.44381 10.92295 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054404 B = 0.004994 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.545007 B = 5605.730895 C = 5816.337475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.528 3.472 14 O -0.552 6.552 15 C -0.164 4.164 16 H 0.122 0.878 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.120 4.120 20 C 0.056 3.944 21 O -0.391 6.391 22 C 0.102 3.898 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -5.207 14.306 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.312 3.688 14 O -0.432 6.432 15 C -0.185 4.185 16 H 0.139 0.861 17 C -0.169 4.169 18 C -0.140 4.140 19 C -0.157 4.157 20 C -0.021 4.021 21 O -0.311 6.311 22 C 0.026 3.974 23 H 0.034 0.966 24 H 0.109 0.891 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.343 -4.018 14.219 15.149 hybrid contribution 0.309 -1.372 -1.037 1.747 sum 3.652 -5.390 13.183 14.703 Atomic orbital electron populations 1.22075 0.98443 0.99091 1.00922 1.18754 0.91025 0.93986 0.79942 0.93352 1.21178 1.32570 1.13266 0.90339 0.92133 1.24887 0.94787 0.94942 0.99056 1.69891 1.35771 1.22395 1.24024 0.86499 0.79167 0.79576 0.81799 1.20164 1.21104 1.20172 1.46468 1.64573 1.13613 1.10304 1.19447 0.78527 0.86958 0.83824 1.90642 1.51603 1.15952 1.84969 1.22197 1.02505 1.00305 0.93541 0.86053 1.22840 0.89308 1.03225 1.01507 1.22015 1.02709 0.97154 0.92143 1.22568 1.02588 0.98216 0.92339 1.23037 1.01033 0.84543 0.93453 1.88461 1.93844 1.29844 1.18916 1.22685 1.01377 0.91717 0.81603 0.96648 0.89131 0.95507 0.92489 0.77848 0.87748 0.87796 0.90027 0.90002 0.91571 0.91717 0.90863 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.15 0.34 -3.31 16 2 C 0.26 6.70 2.56 -69.08 -0.18 6.53 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 N -0.70 -14.48 5.07 -54.93 -0.28 -14.76 16 13 C 0.53 10.31 7.58 -10.99 -0.08 10.23 16 14 O -0.55 -12.71 13.67 5.56 0.08 -12.63 16 15 C -0.16 -2.34 6.11 -92.34 -0.56 -2.91 16 16 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 17 C -0.13 -1.64 10.07 -27.31 -0.27 -1.92 16 18 C -0.14 -1.88 2.30 -154.99 -0.36 -2.23 16 19 C -0.12 -1.25 6.88 -25.21 -0.17 -1.42 16 20 C 0.06 0.62 7.81 38.02 0.30 0.92 16 21 O -0.39 -5.94 11.37 -35.23 -0.40 -6.34 16 22 C 0.10 1.62 5.78 37.48 0.22 1.84 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 28 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.27 7.78 -51.93 -0.40 0.86 16 35 H 0.09 1.65 7.56 -51.93 -0.39 1.26 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -30.27 291.52 -6.97 -37.24 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.20 Total: 5.82 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.17 Total: -5.00 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -38.99 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.32 Total: -18.98 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.27 -6.97 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.680 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds