Wall clock time and date at job start Sun Mar 29 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47714 * 2 1 4 4 C 1.50707 * 109.47356 * 239.99789 * 2 1 3 5 5 H 1.07997 * 120.00053 * 240.00352 * 4 2 1 6 6 C 1.37876 * 119.99834 * 59.99731 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00052 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47170 * 60.00587 * 8 6 4 10 10 H 1.48503 * 109.46907 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47216 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.47390 * 119.99958 * 2 1 3 13 13 C 1.34779 * 120.00246 * 275.00231 * 12 2 1 14 14 O 1.21280 * 119.99443 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00165 * 179.97438 * 13 12 2 16 16 H 1.08996 * 115.57380 * 325.84160 * 15 13 12 17 17 C 1.53297 * 117.53396 * 111.78913 * 15 13 12 18 18 C 1.51576 * 117.53442 * 179.97438 * 15 13 12 19 19 C 1.54255 * 122.63264 * 140.67944 * 18 15 13 20 20 C 1.54637 * 102.04432 * 184.28970 * 19 18 15 21 21 O 1.43344 * 107.68648 * 20.10427 * 20 19 18 22 22 C 1.43929 * 110.12095 * 1.51370 * 21 20 19 23 23 H 1.08998 * 109.47330 * 299.99922 * 1 2 3 24 24 H 1.09003 * 109.47507 * 59.99824 * 1 2 3 25 25 H 1.09004 * 109.47699 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00182 * 180.02562 * 7 6 4 27 27 H 0.97007 * 119.99913 * 94.99313 * 12 2 1 28 28 H 1.09000 * 117.53495 * 0.02562 * 17 15 13 29 29 H 1.08996 * 117.53669 * 214.76356 * 17 15 13 30 30 H 1.09005 * 110.90425 * 66.10631 * 19 18 15 31 31 H 1.08994 * 110.91792 * 302.48476 * 19 18 15 32 32 H 1.08992 * 109.81483 * 260.56114 * 20 19 18 33 33 H 1.08999 * 109.81009 * 139.64207 * 20 19 18 34 34 H 1.09002 * 110.34546 * 96.04414 * 22 21 20 35 35 H 1.09003 * 110.34710 * 218.20526 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8268 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 2.3537 -1.7739 3.6809 17 6 4.0292 -0.3305 4.1226 18 6 2.7726 0.0811 4.8630 19 6 2.4019 -0.4870 6.2484 20 6 2.5965 0.7436 7.1644 21 8 2.5531 1.9134 6.3371 22 6 2.3113 1.5427 4.9676 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0277 0.0005 26 1 0.7088 1.1612 -3.4844 27 1 2.2489 -1.6318 1.1526 28 1 4.5734 0.4456 3.5845 29 1 4.6425 -1.1140 4.5676 30 1 3.0780 -1.2938 6.5316 31 1 1.3659 -0.8252 6.2658 32 1 3.5620 0.6816 7.6663 33 1 1.7965 0.7840 7.9036 34 1 1.2493 1.6225 4.7352 35 1 2.8940 2.1730 4.2957 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364108645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:03 Heat of formation + Delta-G solvation = -85.022576 kcal Electronic energy + Delta-G solvation = -17208.695897 eV Core-core repulsion = 14399.380599 eV Total energy + Delta-G solvation = -2809.315297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.48770 -39.83826 -37.14896 -36.34818 -34.30941 -31.48998 -30.87167 -28.52054 -27.35742 -25.42492 -23.39953 -22.62460 -21.23391 -20.60075 -18.80698 -17.55671 -17.26967 -17.16230 -16.74476 -16.19385 -16.00966 -15.33055 -15.18221 -14.47849 -14.27129 -13.97885 -13.75377 -13.46475 -13.04423 -12.95553 -12.88875 -12.75281 -12.42444 -12.28003 -12.15925 -12.02040 -11.41653 -11.13664 -11.00472 -10.68502 -10.57022 -10.41461 -9.74943 -8.18126 -6.36156 1.44909 1.47091 1.54977 1.62684 2.29116 2.48515 2.75384 3.05992 3.12344 3.32698 3.72201 3.79202 3.93576 4.13470 4.27093 4.47905 4.51714 4.71952 4.72912 4.79487 4.83488 4.90303 4.95731 4.96864 5.08065 5.10587 5.15472 5.42383 5.60312 5.67824 5.89489 6.04171 6.08983 6.71781 6.97131 7.31815 7.56195 8.88054 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054404 B = 0.004994 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.545007 B = 5605.730895 C = 5816.337475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.700 5.700 13 C 0.520 3.480 14 O -0.596 6.596 15 C -0.166 4.166 16 H 0.160 0.840 17 C -0.113 4.113 18 C -0.144 4.144 19 C -0.107 4.107 20 C 0.044 3.956 21 O -0.413 6.413 22 C 0.103 3.897 23 H 0.010 0.990 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -8.246 15.552 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.348 5.348 13 C 0.307 3.693 14 O -0.478 6.478 15 C -0.186 4.186 16 H 0.177 0.823 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.144 4.144 20 C -0.032 4.032 21 O -0.333 6.333 22 C 0.026 3.974 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.103 0.897 29 H 0.166 0.834 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.634 -7.098 15.499 17.666 hybrid contribution -0.094 -0.321 -1.353 1.394 sum 4.540 -7.418 14.146 16.606 Atomic orbital electron populations 1.21890 0.98374 0.99441 0.99460 1.18328 0.91052 0.91854 0.82049 0.98601 1.21521 1.32678 1.13625 0.90765 0.90748 1.25823 0.94832 0.95560 1.02411 1.70052 1.36995 1.23970 1.24687 0.85374 0.78648 0.78717 0.77456 1.18745 1.21262 1.19538 1.46210 1.64824 1.14302 1.09487 1.20412 0.77330 0.86622 0.84939 1.90633 1.53153 1.18250 1.85796 1.22124 1.04240 1.01428 0.90854 0.82291 1.23004 0.88628 1.03440 0.99977 1.22092 1.03446 0.95408 0.93528 1.22601 1.03880 0.98509 0.89370 1.23383 1.02857 0.83584 0.93366 1.88433 1.93862 1.32354 1.18666 1.22406 0.99400 0.93580 0.81969 0.97072 0.91582 0.94015 0.92555 0.75872 0.89717 0.83359 0.86455 0.89414 0.89559 0.90228 0.93400 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.12 2.56 44.24 0.11 14.23 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -28.94 8.73 25.60 0.22 -28.71 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 8 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 N -0.70 -28.79 5.07 -446.10 -2.26 -31.05 16 13 C 0.52 20.44 7.58 87.65 0.66 21.11 16 14 O -0.60 -28.92 13.67 -3.03 -0.04 -28.96 16 15 C -0.17 -4.33 6.11 -11.91 -0.07 -4.41 16 16 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 17 C -0.11 -2.49 10.07 30.22 0.30 -2.19 16 18 C -0.14 -3.58 2.30 -52.49 -0.12 -3.70 16 19 C -0.11 -1.80 6.88 31.58 0.22 -1.58 16 20 C 0.04 0.86 7.81 72.54 0.57 1.42 16 21 O -0.41 -12.46 11.37 -148.98 -1.69 -14.15 16 22 C 0.10 3.37 5.78 72.19 0.42 3.79 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 24 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 25 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.41 13.80 8.54 -92.70 -0.79 13.01 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.77 7.78 -2.39 -0.02 1.75 16 35 H 0.06 2.46 7.56 -2.39 -0.02 2.44 16 Total: -1.00 -69.42 291.52 1.99 -67.42 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.29 Total: 20.71 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 3.43 Total: -4.99 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.02 Total: -83.85 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.73 Total: -43.11 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.42 1.99 -67.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.598 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds