Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46639 * 240.00322 * 2 1 3 5 5 H 1.08004 * 119.99882 * 239.99769 * 4 2 1 6 6 C 1.37879 * 119.99751 * 60.00347 * 4 2 1 7 7 N 1.31515 * 120.00177 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99660 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47207 * 119.99742 * 8 6 4 11 11 H 1.48497 * 109.47365 * 239.99464 * 8 6 4 12 12 N 1.46493 * 109.47312 * 120.00525 * 2 1 3 13 13 C 1.34784 * 120.00048 * 274.99913 * 12 2 1 14 14 O 1.21277 * 119.99714 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99866 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.56771 * 34.41498 * 15 13 12 17 17 C 1.53181 * 117.56247 * 248.56697 * 15 13 12 18 18 C 1.52121 * 59.77681 * 252.59794 * 17 15 13 19 19 C 1.54037 * 121.47467 * 249.14369 * 18 17 15 20 20 C 1.55191 * 101.82799 * 195.69997 * 19 18 17 21 21 O 1.44453 * 103.63544 * 36.32694 * 20 19 18 22 22 C 1.43996 * 107.04896 * 320.43410 * 21 20 19 23 23 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46613 * 299.99761 * 1 2 3 25 25 H 1.08993 * 109.47281 * 59.99315 * 1 2 3 26 26 H 0.97002 * 119.99860 * 180.02562 * 7 6 4 27 27 H 0.97004 * 120.00112 * 95.00005 * 12 2 1 28 28 H 1.09002 * 117.51921 * 0.02562 * 17 15 13 29 29 H 1.08997 * 117.52192 * 145.17251 * 17 15 13 30 30 H 1.09005 * 110.95698 * 313.82892 * 19 18 17 31 31 H 1.08994 * 110.95631 * 77.56376 * 19 18 17 32 32 H 1.08998 * 110.58969 * 277.78992 * 20 19 18 33 33 H 1.09000 * 110.72277 * 154.93115 * 20 19 18 34 34 H 1.08994 * 109.96925 * 266.93760 * 22 21 20 35 35 H 1.08998 * 110.00050 * 145.68123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3222 -1.1193 -4.0080 9 1 3.1481 -2.2855 -3.6040 10 1 1.1674 -1.5863 -4.8166 11 1 3.1469 -0.1855 -4.8162 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1584 2.4115 15 6 2.6501 -0.7288 3.5873 16 1 3.3957 -1.5041 3.4111 17 6 1.6587 -0.9479 4.7344 18 6 2.7693 0.0830 4.8685 19 6 3.9440 -0.1226 5.8435 20 6 4.5432 1.3066 5.9254 21 8 3.3837 2.1661 5.8649 22 6 2.4797 1.5883 4.9045 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7080 1.1612 -3.4843 27 1 2.2491 -1.6319 1.1524 28 1 0.6422 -0.5784 4.5990 29 1 1.7524 -1.8672 5.3123 30 1 3.5875 -0.4523 6.8194 31 1 4.6696 -0.8269 5.4368 32 1 5.2040 1.4943 5.0791 33 1 5.0766 1.4480 6.8654 34 1 2.6531 2.0244 3.9208 35 1 1.4484 1.7618 5.2120 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364108646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = -61.504392 kcal Electronic energy + Delta-G solvation = -17266.774085 eV Core-core repulsion = 14458.478612 eV Total energy + Delta-G solvation = -2808.295472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24202 -38.34411 -35.77494 -34.66433 -32.38982 -30.31115 -29.08286 -27.08956 -25.28254 -24.02934 -22.60232 -21.02068 -19.62692 -19.25647 -17.24882 -16.20503 -15.79385 -15.67799 -15.13619 -14.82738 -14.32501 -13.99745 -13.48968 -13.27531 -12.83492 -12.44697 -12.42981 -11.99276 -11.72519 -11.38770 -11.11233 -11.00004 -10.95112 -10.76868 -10.41009 -10.27206 -10.26360 -9.93430 -9.60839 -9.06313 -8.71341 -8.57279 -7.93327 -6.14539 -4.23956 3.04305 3.22166 3.30009 3.32574 3.77848 3.95721 4.11049 4.32405 4.50913 4.77505 4.85777 4.99480 5.18051 5.20014 5.42742 5.46284 5.51767 5.65650 5.75211 5.85946 5.89999 6.01133 6.07026 6.43004 6.80208 6.94739 7.00513 7.12586 7.44347 7.53946 7.67289 7.89140 8.12771 8.63991 8.75721 9.10080 9.43856 10.91475 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044419 B = 0.005143 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.203719 B = 5442.957336 C = 5491.880548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.529 3.471 14 O -0.551 6.551 15 C -0.170 4.170 16 H 0.121 0.879 17 C -0.136 4.136 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.050 3.950 21 O -0.385 6.385 22 C 0.073 3.927 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -4.956 13.779 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.314 3.686 14 O -0.431 6.431 15 C -0.191 4.191 16 H 0.139 0.861 17 C -0.173 4.173 18 C -0.134 4.134 19 C -0.157 4.157 20 C -0.027 4.027 21 O -0.305 6.305 22 C -0.003 4.003 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.953 -3.790 13.733 14.785 hybrid contribution 0.437 -1.316 -1.109 1.776 sum 4.390 -5.106 12.624 14.308 Atomic orbital electron populations 1.22072 0.98415 0.99099 1.00904 1.18770 0.91070 0.94011 0.79988 0.93319 1.21252 1.32429 1.13216 0.90319 0.92044 1.24894 0.94798 0.94948 0.99090 1.69913 1.35869 1.22472 1.23813 0.86388 0.78612 0.79510 0.82544 1.19753 1.20850 1.20854 1.46505 1.64522 1.13523 1.10361 1.19506 0.78377 0.86886 0.83847 1.90554 1.51870 1.15931 1.84733 1.22367 1.04112 1.03062 0.89599 0.86140 1.22866 0.95330 1.00005 0.99122 1.22090 0.99048 0.95072 0.97215 1.22620 0.95972 0.98311 0.98810 1.23477 0.89334 0.88231 1.01677 1.88884 1.29872 1.48870 1.62828 1.23011 0.93615 0.88992 0.94674 0.95486 0.96671 0.89134 0.92599 0.77840 0.87942 0.87817 0.90028 0.90158 0.92178 0.89324 0.87741 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.08 8.73 -34.44 -0.30 -14.39 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -14.48 5.07 -54.93 -0.28 -14.76 16 13 C 0.53 10.34 7.58 -10.98 -0.08 10.26 16 14 O -0.55 -12.66 13.04 5.56 0.07 -12.59 16 15 C -0.17 -2.44 6.06 -92.12 -0.56 -3.00 16 16 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 17 C -0.14 -1.67 10.01 -27.09 -0.27 -1.94 16 18 C -0.13 -1.81 2.43 -154.68 -0.38 -2.19 16 19 C -0.12 -1.28 6.94 -25.03 -0.17 -1.45 16 20 C 0.05 0.59 7.73 38.32 0.30 0.88 16 21 O -0.39 -6.02 11.53 -35.23 -0.41 -6.43 16 22 C 0.07 1.17 6.57 37.33 0.25 1.42 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 2.00 5.53 -51.93 -0.29 1.72 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -30.29 290.17 -6.89 -37.19 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.11 Total: 6.44 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.15 Total: -5.53 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.35 Total: -38.98 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.33 Total: -19.01 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.29 -6.89 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.316 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds