Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46639 * 240.00322 * 2 1 3 5 5 H 1.08004 * 119.99882 * 239.99769 * 4 2 1 6 6 C 1.37879 * 119.99751 * 60.00347 * 4 2 1 7 7 N 1.31515 * 120.00177 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99660 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47207 * 119.99742 * 8 6 4 11 11 H 1.48497 * 109.47365 * 239.99464 * 8 6 4 12 12 N 1.46493 * 109.47312 * 120.00525 * 2 1 3 13 13 C 1.34784 * 120.00048 * 274.99913 * 12 2 1 14 14 O 1.21277 * 119.99714 * 359.97438 * 13 12 2 15 15 C 1.50698 * 119.99866 * 180.02562 * 13 12 2 16 16 H 1.09002 * 115.56771 * 34.41498 * 15 13 12 17 17 C 1.53181 * 117.56247 * 248.56697 * 15 13 12 18 18 C 1.52121 * 59.77681 * 252.59794 * 17 15 13 19 19 C 1.54037 * 121.47467 * 249.14369 * 18 17 15 20 20 C 1.55191 * 101.82799 * 195.69997 * 19 18 17 21 21 O 1.44453 * 103.63544 * 36.32694 * 20 19 18 22 22 C 1.43996 * 107.04896 * 320.43410 * 21 20 19 23 23 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46613 * 299.99761 * 1 2 3 25 25 H 1.08993 * 109.47281 * 59.99315 * 1 2 3 26 26 H 0.97002 * 119.99860 * 180.02562 * 7 6 4 27 27 H 0.97004 * 120.00112 * 95.00005 * 12 2 1 28 28 H 1.09002 * 117.51921 * 0.02562 * 17 15 13 29 29 H 1.08997 * 117.52192 * 145.17251 * 17 15 13 30 30 H 1.09005 * 110.95698 * 313.82892 * 19 18 17 31 31 H 1.08994 * 110.95631 * 77.56376 * 19 18 17 32 32 H 1.08998 * 110.58969 * 277.78992 * 20 19 18 33 33 H 1.09000 * 110.72277 * 154.93115 * 20 19 18 34 34 H 1.08994 * 109.96925 * 266.93760 * 22 21 20 35 35 H 1.08998 * 110.00050 * 145.68123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3222 -1.1193 -4.0080 9 1 3.1481 -2.2855 -3.6040 10 1 1.1674 -1.5863 -4.8166 11 1 3.1469 -0.1855 -4.8162 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1584 2.4115 15 6 2.6501 -0.7288 3.5873 16 1 3.3957 -1.5041 3.4111 17 6 1.6587 -0.9479 4.7344 18 6 2.7693 0.0830 4.8685 19 6 3.9440 -0.1226 5.8435 20 6 4.5432 1.3066 5.9254 21 8 3.3837 2.1661 5.8649 22 6 2.4797 1.5883 4.9045 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7080 1.1612 -3.4843 27 1 2.2491 -1.6319 1.1524 28 1 0.6422 -0.5784 4.5990 29 1 1.7524 -1.8672 5.3123 30 1 3.5875 -0.4523 6.8194 31 1 4.6696 -0.8269 5.4368 32 1 5.2040 1.4943 5.0791 33 1 5.0766 1.4480 6.8654 34 1 2.6531 2.0244 3.9208 35 1 1.4484 1.7618 5.2120 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364108646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = -82.679478 kcal Electronic energy + Delta-G solvation = -17267.692305 eV Core-core repulsion = 14458.478612 eV Total energy + Delta-G solvation = -2809.213693 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49715 -39.77049 -37.13702 -36.37689 -34.32016 -31.38053 -30.86342 -28.30860 -27.35730 -25.40293 -23.56828 -22.68391 -21.21035 -20.51859 -18.86580 -17.69127 -17.27738 -16.98178 -16.66854 -16.21550 -15.80845 -15.59776 -14.92839 -14.42204 -14.39121 -14.07589 -13.66410 -13.48959 -13.14327 -12.96553 -12.88549 -12.73896 -12.31743 -12.29728 -12.12631 -11.95148 -11.43394 -11.11568 -11.00182 -10.85829 -10.62748 -10.17192 -9.73284 -8.19093 -6.36904 1.43699 1.44637 1.56748 1.63678 2.31936 2.51918 2.77379 3.03364 3.11467 3.40010 3.71945 3.80185 3.96592 4.14683 4.30098 4.51032 4.53580 4.72303 4.75891 4.82433 4.86187 4.89245 4.94229 5.03178 5.07694 5.09481 5.15768 5.43032 5.61332 5.68324 5.88652 5.92442 6.08825 6.71621 6.96721 7.31340 7.56654 8.87471 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044419 B = 0.005143 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.203719 B = 5442.957336 C = 5491.880548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.700 5.700 13 C 0.520 3.480 14 O -0.593 6.593 15 C -0.175 4.175 16 H 0.155 0.845 17 C -0.112 4.112 18 C -0.139 4.139 19 C -0.106 4.106 20 C 0.037 3.963 21 O -0.406 6.406 22 C 0.072 3.928 23 H 0.041 0.959 24 H 0.011 0.989 25 H 0.065 0.935 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -7.900 15.062 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.348 5.348 13 C 0.308 3.692 14 O -0.476 6.476 15 C -0.196 4.196 16 H 0.173 0.827 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.143 4.143 20 C -0.039 4.039 21 O -0.326 6.326 22 C -0.005 4.005 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.106 0.894 29 H 0.165 0.835 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.233 -6.771 15.047 17.311 hybrid contribution 0.047 -0.286 -1.460 1.489 sum 5.280 -7.058 13.587 16.196 Atomic orbital electron populations 1.21883 0.98304 0.99442 0.99468 1.18341 0.91128 0.91851 0.82076 0.98594 1.21580 1.32520 1.13526 0.90768 0.90785 1.25829 0.94862 0.95575 1.02437 1.70066 1.37065 1.24033 1.24574 0.85267 0.78093 0.78502 0.78278 1.18236 1.20392 1.21043 1.46254 1.64838 1.14181 1.09568 1.20476 0.77217 0.86567 0.84938 1.90563 1.53364 1.18129 1.85542 1.22322 1.06119 1.03880 0.87237 0.82716 1.23036 0.93962 1.00864 0.97103 1.22167 1.01154 0.93350 0.97337 1.22653 0.94878 0.97675 0.99061 1.23803 0.88305 0.88838 1.02960 1.88858 1.31094 1.50380 1.62246 1.22769 0.93566 0.91263 0.92859 0.94017 0.97005 0.91615 0.92556 0.75928 0.89369 0.83520 0.87750 0.87686 0.92894 0.86463 0.91787 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.27 14.07 2.56 44.25 0.11 14.18 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.70 -28.87 5.07 -446.10 -2.26 -31.13 16 13 C 0.52 20.49 7.58 87.66 0.66 21.16 16 14 O -0.59 -28.73 13.04 -3.02 -0.04 -28.77 16 15 C -0.17 -4.60 6.06 -11.76 -0.07 -4.67 16 16 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 17 C -0.11 -2.39 10.01 30.36 0.30 -2.08 16 18 C -0.14 -3.47 2.43 -52.29 -0.13 -3.60 16 19 C -0.11 -1.84 6.94 31.70 0.22 -1.62 16 20 C 0.04 0.80 7.73 72.73 0.56 1.36 16 21 O -0.41 -12.61 11.53 -148.98 -1.72 -14.33 16 22 C 0.07 2.36 6.57 72.10 0.47 2.83 16 23 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 26 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.41 13.88 8.54 -92.71 -0.79 13.08 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.10 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 2.63 5.53 -2.39 -0.01 2.62 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -69.41 290.17 2.02 -67.38 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.30 Total: 21.81 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 3.48 Total: -6.05 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.02 Total: -83.96 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.76 Total: -43.10 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -69.41 2.02 -67.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.297 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds