Wall clock time and date at job start Sun Mar 29 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.34780 * 120.00034 * 275.00683 * 12 2 1 14 14 O 1.21278 * 119.99851 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00157 * 179.97438 * 13 12 2 16 16 H 1.09008 * 115.56457 * 34.40861 * 15 13 12 17 17 C 1.53191 * 117.52214 * 248.63859 * 15 13 12 18 18 C 1.52109 * 117.52455 * 180.19472 * 15 13 12 19 19 C 1.53711 * 121.70462 * 356.25985 * 18 15 13 20 20 C 1.54692 * 103.69777 * 216.11790 * 19 18 15 21 21 O 1.44505 * 104.87047 * 23.83068 * 20 19 18 22 22 C 1.44632 * 105.46210 * 320.02532 * 21 20 19 23 23 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 25 25 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 28 28 H 1.08993 * 117.51967 * 359.97438 * 17 15 13 29 29 H 1.08992 * 117.52267 * 145.15004 * 17 15 13 30 30 H 1.09003 * 110.57699 * 334.66891 * 19 18 15 31 31 H 1.08998 * 110.58171 * 97.41494 * 19 18 15 32 32 H 1.08997 * 110.36175 * 142.67634 * 20 19 18 33 33 H 1.08998 * 110.36375 * 264.87772 * 20 19 18 34 34 H 1.09002 * 110.42274 * 280.88626 * 22 21 20 35 35 H 1.08999 * 110.42069 * 158.42416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 3.3942 -1.5047 3.4119 17 6 1.6556 -0.9481 4.7331 18 6 2.7680 0.0829 4.8686 19 6 2.4745 1.5914 4.8993 20 6 3.5090 2.1454 5.9073 21 8 4.5835 1.1792 5.9047 22 6 3.9390 -0.1141 5.8443 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7046 1.1585 -3.4844 27 1 2.2492 -1.6317 1.1525 28 1 0.6396 -0.5780 4.5964 29 1 1.7481 -1.8676 5.3109 30 1 2.6264 2.0314 3.9136 31 1 1.4588 1.7771 5.2482 32 1 3.8737 3.1190 5.5799 33 1 3.0674 2.2211 6.9009 34 1 3.5695 -0.4013 6.8288 35 1 4.6297 -0.8658 5.4624 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364108647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:06 Heat of formation + Delta-G solvation = -81.697319 kcal Electronic energy + Delta-G solvation = -17255.703483 eV Core-core repulsion = 14446.532380 eV Total energy + Delta-G solvation = -2809.171103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45167 -39.77216 -37.13061 -36.30499 -34.32038 -31.43872 -30.79953 -28.33200 -27.35988 -25.27351 -23.65323 -22.64822 -21.20169 -20.51066 -18.79709 -17.63650 -17.26935 -16.81517 -16.77280 -16.25908 -15.77947 -15.68213 -15.09848 -14.42289 -14.38464 -13.93169 -13.57476 -13.38389 -13.21018 -12.94447 -12.86382 -12.71765 -12.41409 -12.29365 -12.14152 -11.85994 -11.40835 -11.12177 -11.03795 -10.65355 -10.62934 -10.26313 -9.72482 -8.19162 -6.37025 1.43899 1.44896 1.55521 1.66930 2.32862 2.53667 2.75287 3.08435 3.11428 3.54922 3.63780 3.87345 4.00039 4.20403 4.30308 4.51166 4.55391 4.70391 4.73436 4.76586 4.83772 4.86847 4.89738 4.99508 5.07541 5.09880 5.34515 5.45296 5.62549 5.69878 5.84730 5.90832 6.09263 6.71205 6.98392 7.31265 7.58348 8.87101 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.005130 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.571621 B = 5456.981773 C = 5509.278827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.703 5.703 13 C 0.522 3.478 14 O -0.590 6.590 15 C -0.182 4.182 16 H 0.149 0.851 17 C -0.109 4.109 18 C -0.139 4.139 19 C -0.134 4.134 20 C 0.049 3.951 21 O -0.400 6.400 22 C 0.085 3.915 23 H 0.040 0.960 24 H 0.011 0.989 25 H 0.066 0.934 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -6.134 15.827 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.351 5.351 13 C 0.310 3.690 14 O -0.473 6.473 15 C -0.203 4.203 16 H 0.167 0.833 17 C -0.146 4.146 18 C -0.139 4.139 19 C -0.172 4.172 20 C -0.027 4.027 21 O -0.319 6.319 22 C 0.009 3.991 23 H 0.059 0.941 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.239 0.761 28 H 0.108 0.892 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.000 -5.146 15.705 16.796 hybrid contribution -0.117 -0.257 -1.366 1.395 sum 2.883 -5.403 14.339 15.592 Atomic orbital electron populations 1.21877 0.98250 0.99409 0.99484 1.18328 0.91143 0.91803 0.82039 0.98639 1.21555 1.32622 1.13563 0.90864 0.90932 1.25826 0.94849 0.95573 1.02401 1.70057 1.36841 1.24137 1.24632 0.85313 0.78969 0.78035 0.77829 1.19504 1.21212 1.18861 1.46274 1.65009 1.14152 1.09648 1.20425 0.77155 0.86601 0.84867 1.90540 1.53227 1.17981 1.85519 1.22294 1.06181 1.04106 0.87731 0.83348 1.23033 0.93879 1.00783 0.96901 1.22257 1.00592 0.93997 0.97103 1.22620 0.99785 0.93467 1.01286 1.23538 0.87202 0.93071 0.98899 1.89112 1.30563 1.16842 1.95427 1.22990 0.92110 0.86119 0.97889 0.94096 0.96967 0.91561 0.92533 0.76066 0.89216 0.83548 0.90680 0.90519 0.89339 0.90065 0.88708 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 14.25 2.56 44.25 0.11 14.36 16 3 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 4 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.73 5.31 84.66 0.45 1.18 16 7 N -0.92 -53.19 11.31 21.45 0.24 -52.95 16 8 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.70 -29.58 5.07 -446.09 -2.26 -31.84 16 13 C 0.52 20.95 7.58 87.66 0.66 21.62 16 14 O -0.59 -28.63 13.01 -3.02 -0.04 -28.67 16 15 C -0.18 -5.00 6.06 -11.77 -0.07 -5.07 16 16 H 0.15 3.20 8.14 -2.38 -0.02 3.18 16 17 C -0.11 -2.27 10.03 30.42 0.31 -1.96 16 18 C -0.14 -3.45 2.51 -52.25 -0.13 -3.58 16 19 C -0.13 -3.93 5.96 31.41 0.19 -3.74 16 20 C 0.05 1.19 7.65 72.56 0.56 1.75 16 21 O -0.40 -10.72 11.65 -148.98 -1.74 -12.46 16 22 C 0.09 1.72 7.44 72.21 0.54 2.26 16 23 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 25 H 0.07 3.72 6.06 -2.39 -0.01 3.71 16 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.40 14.28 8.54 -92.71 -0.79 13.49 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.90 5.47 -2.39 -0.01 2.88 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.81 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -68.99 290.07 2.03 -66.96 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.30 Total: 23.11 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 3.50 Total: -8.38 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.02 Total: -84.79 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.78 Total: -41.13 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.99 2.03 -66.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364108647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.739 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds