Wall clock time and date at job start Sun Mar 29 2020 22:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47228 * 2 1 4 4 C 1.50706 * 109.47109 * 239.99553 * 2 1 3 5 5 H 1.07993 * 120.00044 * 240.00161 * 4 2 1 6 6 C 1.37881 * 119.99942 * 60.00227 * 4 2 1 7 7 N 1.31523 * 119.99641 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00248 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47093 * 59.99788 * 8 6 4 10 10 H 1.48500 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46661 * 299.99787 * 8 6 4 12 12 N 1.46500 * 109.47069 * 120.00285 * 2 1 3 13 13 C 1.34780 * 119.99662 * 274.99671 * 12 2 1 14 14 O 1.21282 * 119.99707 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00450 * 180.02562 * 13 12 2 16 16 H 1.09005 * 110.66561 * 61.75694 * 15 13 12 17 17 C 1.55007 * 110.74631 * 298.54666 * 15 13 12 18 18 C 1.55813 * 102.78764 * 241.67301 * 17 15 13 19 19 H 1.09006 * 115.38848 * 158.11486 * 18 17 15 20 20 C 1.55822 * 105.32973 * 287.30981 * 18 17 15 21 21 C 1.56780 * 102.93017 * 72.47929 * 20 18 17 22 22 C 1.55817 * 110.75292 * 185.18195 * 15 13 12 23 23 H 1.08998 * 115.38426 * 320.20711 * 22 15 13 24 24 O 1.46527 * 101.24896 * 85.90517 * 22 15 13 25 25 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47064 * 300.00109 * 1 2 3 27 27 H 1.08993 * 109.47303 * 60.00569 * 1 2 3 28 28 H 0.97001 * 119.99890 * 180.02562 * 7 6 4 29 29 H 0.96993 * 120.00675 * 95.00238 * 12 2 1 30 30 H 1.08999 * 110.74662 * 0.02562 * 17 15 13 31 31 H 1.09009 * 110.74515 * 123.34707 * 17 15 13 32 32 H 1.08992 * 110.75311 * 191.01442 * 20 18 17 33 33 H 1.09007 * 110.75036 * 314.18654 * 20 18 17 34 34 H 1.09004 * 111.52054 * 242.08274 * 21 20 18 35 35 H 1.09002 * 110.74920 * 118.18491 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1206 -4.0080 9 1 1.8257 -2.5205 -4.0077 10 1 1.8269 -0.4201 -5.2205 11 1 3.8063 -1.1211 -4.0081 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4116 15 6 2.6499 -0.7284 3.5875 16 1 3.6618 -1.1018 3.4296 17 6 1.6944 -1.8826 3.9843 18 6 1.2104 -1.4574 5.4030 19 1 0.2706 -1.9029 5.7292 20 6 2.4339 -1.6846 6.3409 21 6 3.4052 -0.5217 5.9383 22 6 2.5910 0.2104 4.8296 23 1 2.8773 1.2461 4.6466 24 8 1.2122 0.0027 5.2798 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7081 1.1607 -3.4845 29 1 2.2491 -1.6318 1.1526 30 1 0.8549 -1.9443 3.2918 31 1 2.2310 -2.8306 4.0273 32 1 2.1396 -1.5999 7.3869 33 1 2.8937 -2.6539 6.1479 34 1 4.3440 -0.9052 5.5384 35 1 3.5868 0.1404 6.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364579421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:10 Heat of formation + Delta-G solvation = -79.073796 kcal Electronic energy + Delta-G solvation = -17594.487820 eV Core-core repulsion = 14785.430482 eV Total energy + Delta-G solvation = -2809.057339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84806 -38.24886 -34.72623 -32.60739 -32.05238 -30.81957 -29.62740 -28.49778 -25.23151 -23.33654 -21.73922 -20.85270 -20.15289 -19.14848 -17.43052 -16.50857 -15.93794 -15.51048 -15.00296 -14.70231 -14.21139 -13.79430 -13.61490 -12.82848 -12.54476 -12.36265 -11.87231 -11.70804 -11.59493 -11.38952 -11.10219 -11.05950 -10.97913 -10.90617 -10.66492 -10.45029 -10.31403 -10.21168 -9.83510 -9.03183 -8.86926 -8.52331 -7.85885 -6.10373 -4.19948 3.25929 3.31208 3.32279 3.43821 3.81020 4.15758 4.38325 4.53058 4.62783 4.73213 4.87910 5.13203 5.16956 5.19294 5.21489 5.37765 5.52093 5.70734 5.74138 5.78250 5.95776 6.02401 6.11621 6.16458 6.64735 6.86291 7.01829 7.19192 7.51181 7.59581 7.72047 7.94783 8.17975 8.71288 8.80834 9.18857 9.47877 10.95514 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050369 B = 0.005511 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.760981 B = 5079.303207 C = 5217.583714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.710 5.710 13 C 0.511 3.489 14 O -0.550 6.550 15 C -0.143 4.143 16 H 0.103 0.897 17 C -0.139 4.139 18 C 0.058 3.942 19 H 0.128 0.872 20 C -0.147 4.147 21 C -0.149 4.149 22 C 0.089 3.911 23 H 0.136 0.864 24 O -0.364 6.364 25 H 0.025 0.975 26 H 0.015 0.985 27 H 0.089 0.911 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -7.407 14.394 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.296 3.704 14 O -0.428 6.428 15 C -0.164 4.164 16 H 0.121 0.879 17 C -0.177 4.177 18 C 0.000 4.000 19 H 0.146 0.854 20 C -0.185 4.185 21 C -0.187 4.187 22 C 0.031 3.969 23 H 0.153 0.847 24 O -0.283 6.283 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.219 0.781 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.325 -6.253 14.283 15.943 hybrid contribution 0.593 -1.151 -1.017 1.647 sum 3.917 -7.404 13.266 15.690 Atomic orbital electron populations 1.22065 0.98524 0.99004 1.00896 1.18719 0.91014 0.93936 0.80048 0.93483 1.21185 1.32482 1.13190 0.90395 0.92209 1.24897 0.94828 0.94961 0.99039 1.69903 1.35773 1.22448 1.23952 0.86506 0.79126 0.79573 0.81853 1.20188 1.21117 1.20212 1.46498 1.65272 1.13437 1.10502 1.20122 0.78624 0.87381 0.84316 1.90650 1.51006 1.16185 1.84999 1.23101 1.00880 0.97143 0.95325 0.87938 1.23270 0.99526 0.97366 0.97548 1.24675 0.98265 0.82643 0.94418 0.85415 1.23532 0.96094 0.98823 1.00020 1.23575 0.98436 0.97557 0.99141 1.24461 0.82086 0.99776 0.90614 0.84673 1.90143 1.29752 1.20935 1.87450 0.95592 0.96614 0.89218 0.92530 0.78097 0.90029 0.90029 0.91014 0.90684 0.90382 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.81 -0.09 1.70 16 7 N -0.88 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.71 -15.08 4.98 -54.93 -0.27 -15.35 16 13 C 0.51 10.50 6.98 -10.99 -0.08 10.42 16 14 O -0.55 -13.70 15.55 5.56 0.09 -13.61 16 15 C -0.14 -2.11 2.89 -89.21 -0.26 -2.37 16 16 H 0.10 1.27 7.80 -51.93 -0.40 0.86 16 17 C -0.14 -1.74 6.11 -24.17 -0.15 -1.88 16 18 C 0.06 0.69 5.71 -23.72 -0.14 0.56 16 19 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 20 C -0.15 -1.40 6.57 -23.18 -0.15 -1.55 16 21 C -0.15 -1.56 6.65 -23.18 -0.15 -1.71 16 22 C 0.09 1.29 4.59 -23.72 -0.11 1.18 16 23 H 0.14 2.10 7.71 -51.93 -0.40 1.70 16 24 O -0.36 -5.97 11.65 -35.23 -0.41 -6.38 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.39 7.09 8.53 -40.82 -0.35 6.74 16 30 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 31 H 0.08 0.78 7.81 -51.92 -0.41 0.38 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.59 7.81 -51.93 -0.41 0.18 16 34 H 0.08 0.70 7.80 -51.93 -0.40 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 285.30 15.07 4.30 4.30 Total: -1.00 -32.10 285.30 -7.09 -39.18 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.13 Total: 5.70 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.26 Total: -4.97 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.35 Total: -39.94 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.32 Total: -20.00 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.10 -7.09 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364579421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.891 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds