Wall clock time and date at job start Sun Mar 29 2020 22:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47228 * 2 1 4 4 C 1.50706 * 109.47109 * 239.99553 * 2 1 3 5 5 H 1.07993 * 120.00044 * 240.00161 * 4 2 1 6 6 C 1.37881 * 119.99942 * 60.00227 * 4 2 1 7 7 N 1.31523 * 119.99641 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00248 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47093 * 59.99788 * 8 6 4 10 10 H 1.48500 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46661 * 299.99787 * 8 6 4 12 12 N 1.46500 * 109.47069 * 120.00285 * 2 1 3 13 13 C 1.34780 * 119.99662 * 274.99671 * 12 2 1 14 14 O 1.21282 * 119.99707 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00450 * 180.02562 * 13 12 2 16 16 H 1.09005 * 110.66561 * 61.75694 * 15 13 12 17 17 C 1.55007 * 110.74631 * 298.54666 * 15 13 12 18 18 C 1.55813 * 102.78764 * 241.67301 * 17 15 13 19 19 H 1.09006 * 115.38848 * 158.11486 * 18 17 15 20 20 C 1.55822 * 105.32973 * 287.30981 * 18 17 15 21 21 C 1.56780 * 102.93017 * 72.47929 * 20 18 17 22 22 C 1.55817 * 110.75292 * 185.18195 * 15 13 12 23 23 H 1.08998 * 115.38426 * 320.20711 * 22 15 13 24 24 O 1.46527 * 101.24896 * 85.90517 * 22 15 13 25 25 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47064 * 300.00109 * 1 2 3 27 27 H 1.08993 * 109.47303 * 60.00569 * 1 2 3 28 28 H 0.97001 * 119.99890 * 180.02562 * 7 6 4 29 29 H 0.96993 * 120.00675 * 95.00238 * 12 2 1 30 30 H 1.08999 * 110.74662 * 0.02562 * 17 15 13 31 31 H 1.09009 * 110.74515 * 123.34707 * 17 15 13 32 32 H 1.08992 * 110.75311 * 191.01442 * 20 18 17 33 33 H 1.09007 * 110.75036 * 314.18654 * 20 18 17 34 34 H 1.09004 * 111.52054 * 242.08274 * 21 20 18 35 35 H 1.09002 * 110.74920 * 118.18491 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1206 -4.0080 9 1 1.8257 -2.5205 -4.0077 10 1 1.8269 -0.4201 -5.2205 11 1 3.8063 -1.1211 -4.0081 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1584 2.4116 15 6 2.6499 -0.7284 3.5875 16 1 3.6618 -1.1018 3.4296 17 6 1.6944 -1.8826 3.9843 18 6 1.2104 -1.4574 5.4030 19 1 0.2706 -1.9029 5.7292 20 6 2.4339 -1.6846 6.3409 21 6 3.4052 -0.5217 5.9383 22 6 2.5910 0.2104 4.8296 23 1 2.8773 1.2461 4.6466 24 8 1.2122 0.0027 5.2798 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7081 1.1607 -3.4845 29 1 2.2491 -1.6318 1.1526 30 1 0.8549 -1.9443 3.2918 31 1 2.2310 -2.8306 4.0273 32 1 2.1396 -1.5999 7.3869 33 1 2.8937 -2.6539 6.1479 34 1 4.3440 -0.9052 5.5384 35 1 3.5868 0.1404 6.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364579421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:10 Heat of formation + Delta-G solvation = -102.392338 kcal Electronic energy + Delta-G solvation = -17595.498988 eV Core-core repulsion = 14785.430482 eV Total energy + Delta-G solvation = -2810.068507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97803 -39.88808 -36.70066 -34.41787 -33.34272 -31.99981 -30.61564 -30.27220 -27.36305 -24.66877 -22.96718 -22.18253 -21.40872 -20.74845 -18.99614 -17.87533 -17.47611 -17.13721 -16.36981 -16.12299 -15.77920 -15.17072 -14.99506 -14.47238 -14.26026 -13.71564 -13.52671 -13.04859 -12.95231 -12.77576 -12.66421 -12.51024 -12.36182 -12.28711 -12.15141 -12.00628 -11.85396 -11.42053 -11.13931 -10.89344 -10.65066 -10.48263 -9.75687 -8.18129 -6.36710 1.44605 1.47262 1.55241 1.82716 2.34200 2.58880 2.96666 3.11975 3.51354 3.61847 3.76930 3.96317 4.13326 4.15696 4.28819 4.45682 4.54956 4.64321 4.72532 4.87638 4.91059 5.01705 5.03251 5.06868 5.14183 5.18451 5.28200 5.41434 5.60110 5.66199 5.69884 5.89292 6.07818 6.71276 6.97051 7.31455 7.57493 8.88237 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050369 B = 0.005511 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.760981 B = 5079.303207 C = 5217.583714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.603 6.603 15 C -0.133 4.133 16 H 0.137 0.863 17 C -0.134 4.134 18 C 0.050 3.950 19 H 0.144 0.856 20 C -0.136 4.136 21 C -0.138 4.138 22 C 0.074 3.926 23 H 0.108 0.892 24 O -0.408 6.408 25 H 0.041 0.959 26 H 0.005 0.995 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -10.609 15.278 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.485 6.485 15 C -0.155 4.155 16 H 0.155 0.845 17 C -0.172 4.172 18 C -0.007 4.007 19 H 0.161 0.839 20 C -0.173 4.173 21 C -0.176 4.176 22 C 0.016 3.984 23 H 0.126 0.874 24 O -0.328 6.328 25 H 0.060 0.940 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.853 -9.503 15.197 18.569 hybrid contribution 0.078 -0.079 -1.262 1.267 sum 4.931 -9.583 13.935 17.616 Atomic orbital electron populations 1.21881 0.98600 0.99337 0.99223 1.18315 0.90940 0.91823 0.82282 0.98849 1.21512 1.32716 1.13622 0.90684 0.90651 1.25869 0.94813 0.95571 1.02512 1.70068 1.36967 1.24054 1.24706 0.85335 0.78659 0.78668 0.77280 1.18711 1.21247 1.19440 1.46246 1.65243 1.14142 1.09598 1.21253 0.77226 0.86949 0.85531 1.90623 1.53106 1.18875 1.85909 1.23153 1.02808 0.97577 0.91933 0.84537 1.23335 0.98565 0.98031 0.97253 1.25027 1.00421 0.80386 0.94889 0.83885 1.23526 0.94357 0.99606 0.99843 1.23559 0.98843 0.97566 0.97610 1.24537 0.82611 0.99101 0.92148 0.87370 1.90110 1.30956 1.24008 1.87744 0.94021 0.97597 0.91505 0.92540 0.76014 0.92265 0.85793 0.90002 0.87729 0.88062 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.52 2.56 44.25 0.11 14.63 16 3 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -29.35 8.73 25.60 0.22 -29.13 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.67 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.56 16 8 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 N -0.70 -30.06 4.98 -446.10 -2.22 -32.28 16 13 C 0.50 21.03 6.98 87.65 0.61 21.64 16 14 O -0.60 -31.77 15.55 -3.04 -0.05 -31.82 16 15 C -0.13 -3.72 2.89 -9.88 -0.03 -3.75 16 16 H 0.14 2.88 7.80 -2.38 -0.02 2.86 16 17 C -0.13 -2.96 6.11 32.25 0.20 -2.76 16 18 C 0.05 1.06 5.71 32.54 0.19 1.25 16 19 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 20 C -0.14 -2.00 6.57 32.89 0.22 -1.78 16 21 C -0.14 -2.44 6.65 32.89 0.22 -2.22 16 22 C 0.07 2.11 4.59 32.54 0.15 2.26 16 23 H 0.11 3.56 7.71 -2.39 -0.02 3.54 16 24 O -0.41 -13.33 11.65 -148.98 -1.74 -15.07 16 25 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.40 14.26 8.53 -92.71 -0.79 13.47 16 30 H 0.06 1.58 7.73 -2.39 -0.02 1.57 16 31 H 0.12 1.70 7.81 -2.38 -0.02 1.68 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 0.98 7.81 -2.38 -0.02 0.96 16 34 H 0.10 1.33 7.80 -2.38 -0.02 1.31 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.83 285.30 1.56 -72.26 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.30 Total: 21.42 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 3.00 Total: -5.07 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.98 Total: -85.84 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.78 Total: -46.89 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -73.83 1.56 -72.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364579421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.127 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds