Wall clock time and date at job start Sun Mar 29 2020 22:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 119.99678 * 2 1 4 4 H 1.08008 * 119.99759 * 158.18018 * 3 2 1 5 5 C 1.38955 * 120.00443 * 338.18133 * 3 2 1 6 6 N 1.31407 * 119.99606 * 345.95869 * 5 3 2 7 7 Si 1.86802 * 120.00221 * 165.96769 * 5 3 2 8 8 H 1.48493 * 109.47398 * 94.74499 * 7 5 3 9 9 H 1.48499 * 109.46660 * 214.74846 * 7 5 3 10 10 H 1.48500 * 109.46864 * 334.74197 * 7 5 3 11 11 C 1.34774 * 120.00255 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00422 * 184.89931 * 11 2 1 13 13 C 1.50703 * 119.99698 * 4.89705 * 11 2 1 14 14 H 1.08996 * 110.38914 * 304.60103 * 13 11 2 15 15 O 1.44637 * 110.43300 * 182.06218 * 13 11 2 16 16 C 1.44631 * 104.50699 * 198.49351 * 15 13 11 17 17 C 1.54561 * 104.47043 * 42.75953 * 16 15 13 18 18 H 1.09006 * 112.77932 * 212.75135 * 17 16 15 19 19 C 1.55415 * 108.83549 * 86.84500 * 17 16 15 20 20 C 1.54830 * 104.40454 * 224.97972 * 19 17 16 21 21 C 1.54835 * 102.72830 * 38.54297 * 20 19 17 22 22 C 1.54121 * 104.37022 * 321.72652 * 21 20 19 23 23 H 1.09000 * 112.27166 * 259.85829 * 22 21 20 24 24 H 1.09004 * 109.46863 * 209.84400 * 1 2 3 25 25 H 1.09001 * 109.47369 * 329.84441 * 1 2 3 26 26 H 1.09005 * 109.46973 * 89.84762 * 1 2 3 27 27 H 0.97006 * 119.99916 * 180.02562 * 6 5 3 28 28 H 1.08993 * 110.43701 * 284.01204 * 16 15 13 29 29 H 1.09004 * 110.53474 * 161.55741 * 16 15 13 30 30 H 1.09004 * 110.20896 * 106.36537 * 19 17 16 31 31 H 1.09001 * 110.77549 * 343.88165 * 19 17 16 32 32 H 1.08999 * 110.76194 * 280.23363 * 20 19 17 33 33 H 1.08997 * 110.91859 * 156.92271 * 20 19 17 34 34 H 1.09007 * 110.45141 * 203.00110 * 21 20 19 35 35 H 1.09002 * 110.56150 * 80.50192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1724 1.2208 0.3477 5 6 1.5303 2.3476 -0.4472 6 7 0.4041 2.2731 -1.1202 7 14 2.2977 4.0132 -0.0920 8 1 3.1321 4.4304 -1.2474 9 1 1.2245 5.0151 0.1310 10 1 3.1464 3.9182 1.1229 11 6 2.1389 -1.1671 -0.0005 12 8 3.3485 -1.1691 0.0892 13 6 1.3895 -2.4698 -0.1125 14 1 0.6370 -2.5437 0.6725 15 8 2.3057 -3.5869 -0.0440 16 6 1.5638 -4.6984 -0.5971 17 6 0.8492 -4.1084 -1.8340 18 1 -0.1203 -4.5702 -2.0216 19 6 1.8047 -4.1991 -3.0563 20 6 1.6894 -2.8142 -3.7390 21 6 1.6000 -1.8462 -2.5339 22 6 0.7308 -2.5955 -1.5051 23 1 -0.3027 -2.2491 -1.5072 24 1 -0.3633 -0.8914 0.5114 25 1 -0.3634 0.8886 0.5162 26 1 -0.3633 0.0027 -1.0277 27 1 -0.0286 3.0830 -1.4328 28 1 0.8343 -5.0659 0.1246 29 1 2.2405 -5.4996 -0.8946 30 1 1.4752 -4.9865 -3.7343 31 1 2.8298 -4.3803 -2.7331 32 1 0.7871 -2.7575 -4.3478 33 1 2.5734 -2.6019 -4.3403 34 1 1.1209 -0.9129 -2.8297 35 1 2.5915 -1.6514 -2.1249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368692326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:22 Heat of formation + Delta-G solvation = -73.183960 kcal Electronic energy + Delta-G solvation = -18396.026525 eV Core-core repulsion = 15587.224589 eV Total energy + Delta-G solvation = -2808.801936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30641 -37.72337 -35.28878 -34.51550 -31.77127 -30.19120 -29.17096 -26.42100 -25.76036 -24.41385 -22.68464 -20.70083 -19.49226 -18.67404 -16.84179 -16.46890 -15.95912 -14.95570 -14.85409 -14.58127 -14.00697 -13.88605 -13.85226 -13.36278 -12.89688 -12.08138 -11.54409 -11.42039 -11.27931 -11.10658 -11.02548 -10.89850 -10.76532 -10.67583 -10.46238 -10.42339 -10.34555 -10.22459 -10.11413 -9.26743 -9.00263 -8.23469 -7.65421 -6.30731 -3.84436 3.17277 3.26407 3.32750 3.86624 3.99236 4.33512 4.59120 4.76170 4.96644 5.13073 5.23475 5.43153 5.51993 5.54878 5.60802 5.73098 5.83109 5.87060 5.94162 6.01008 6.06638 6.08064 6.24176 6.32571 6.39426 6.52718 6.75555 6.85921 6.95331 7.15478 7.19577 7.58969 8.15655 8.52217 9.21585 9.43610 10.01044 10.73565 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037082 B = 0.007926 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.902916 B = 3531.859188 C = 3741.199508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.443 5.443 3 C -0.304 4.304 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.882 5.882 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.462 3.538 12 O -0.573 6.573 13 C 0.066 3.934 14 H 0.073 0.927 15 O -0.342 6.342 16 C 0.044 3.956 17 C -0.126 4.126 18 H 0.089 0.911 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.092 0.908 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.266 0.734 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -9.647 -2.825 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.432 4.432 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.521 5.521 7 Si 0.751 3.249 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.249 3.751 12 O -0.456 6.456 13 C 0.004 3.996 14 H 0.090 0.910 15 O -0.260 6.260 16 C -0.033 4.033 17 C -0.145 4.145 18 H 0.107 0.893 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.125 4.125 23 H 0.110 0.890 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.953 -9.486 -2.763 10.641 hybrid contribution -0.242 0.863 0.025 0.897 sum -4.195 -8.623 -2.738 9.972 Atomic orbital electron populations 1.21545 0.81302 0.98997 1.01377 1.43444 1.05315 1.04317 1.63297 1.19640 0.99226 0.83502 1.40782 0.88361 1.25283 0.96597 0.99881 0.95416 1.70004 1.18380 1.29119 1.34613 0.85950 0.78587 0.81329 0.79066 1.20453 1.20858 1.19406 1.19459 0.87809 0.84076 0.83767 1.90540 1.13989 1.86679 1.54429 1.22973 0.91290 0.88432 0.96859 0.90956 1.89390 1.35918 1.17605 1.83037 1.23508 0.95406 0.90796 0.93627 1.23458 0.98967 0.95831 0.96194 0.89262 1.22587 0.99424 0.97314 0.95767 1.22460 1.01056 0.94811 0.97605 1.22458 1.01261 0.97804 0.94077 1.23079 1.00009 0.94585 0.94830 0.89022 0.95877 0.91037 0.92392 0.92355 0.92869 0.89223 0.92250 0.91076 0.92016 0.91836 0.90831 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.46 7.46 59.85 0.45 2.91 16 2 N -0.44 -11.38 3.00 -122.19 -0.37 -11.74 16 3 C -0.30 -8.49 9.31 -14.93 -0.14 -8.63 16 4 H 0.10 2.91 7.38 -52.48 -0.39 2.53 16 5 C 0.03 0.82 5.05 -17.47 -0.09 0.73 16 6 N -0.88 -23.04 10.73 55.50 0.60 -22.45 16 7 Si 0.92 20.79 29.58 -169.99 -5.03 15.76 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.46 11.71 4.82 -10.99 -0.05 11.66 16 12 O -0.57 -16.89 15.82 -13.59 -0.22 -17.11 16 13 C 0.07 1.33 2.57 -27.06 -0.07 1.26 16 14 H 0.07 1.33 7.05 -51.93 -0.37 0.96 16 15 O -0.34 -6.98 10.96 -54.38 -0.60 -7.58 16 16 C 0.04 0.64 6.86 37.98 0.26 0.90 16 17 C -0.13 -1.75 4.11 -87.31 -0.36 -2.11 16 18 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 19 C -0.11 -1.55 6.29 -24.48 -0.15 -1.70 16 20 C -0.12 -1.85 6.90 -24.80 -0.17 -2.02 16 21 C -0.12 -2.28 5.53 -25.18 -0.14 -2.42 16 22 C -0.11 -1.82 3.08 -88.00 -0.27 -2.09 16 23 H 0.09 1.45 7.50 -51.93 -0.39 1.06 16 24 H 0.02 0.43 6.36 -51.93 -0.33 0.10 16 25 H 0.07 1.66 6.95 -51.93 -0.36 1.30 16 26 H 0.06 1.29 7.37 -51.93 -0.38 0.91 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.14 7.79 -51.93 -0.40 0.74 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.05 7.64 -51.93 -0.40 0.65 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.96 6.04 -51.93 -0.31 1.65 16 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -31.33 274.64 -7.21 -38.54 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.00 Total: 1.94 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.74 Total: -1.51 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.23 Total: -34.19 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.81 Total: -24.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.33 -7.21 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368692326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.644 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds