Wall clock time and date at job start Sun Mar 29 2020 22:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 119.99678 * 2 1 4 4 H 1.08008 * 119.99759 * 158.18018 * 3 2 1 5 5 C 1.38955 * 120.00443 * 338.18133 * 3 2 1 6 6 N 1.31407 * 119.99606 * 345.95869 * 5 3 2 7 7 Si 1.86802 * 120.00221 * 165.96769 * 5 3 2 8 8 H 1.48493 * 109.47398 * 94.74499 * 7 5 3 9 9 H 1.48499 * 109.46660 * 214.74846 * 7 5 3 10 10 H 1.48500 * 109.46864 * 334.74197 * 7 5 3 11 11 C 1.34774 * 120.00255 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00422 * 184.89931 * 11 2 1 13 13 C 1.50703 * 119.99698 * 4.89705 * 11 2 1 14 14 H 1.08996 * 110.38914 * 304.60103 * 13 11 2 15 15 O 1.44637 * 110.43300 * 182.06218 * 13 11 2 16 16 C 1.44631 * 104.50699 * 198.49351 * 15 13 11 17 17 C 1.54561 * 104.47043 * 42.75953 * 16 15 13 18 18 H 1.09006 * 112.77932 * 212.75135 * 17 16 15 19 19 C 1.55415 * 108.83549 * 86.84500 * 17 16 15 20 20 C 1.54830 * 104.40454 * 224.97972 * 19 17 16 21 21 C 1.54835 * 102.72830 * 38.54297 * 20 19 17 22 22 C 1.54121 * 104.37022 * 321.72652 * 21 20 19 23 23 H 1.09000 * 112.27166 * 259.85829 * 22 21 20 24 24 H 1.09004 * 109.46863 * 209.84400 * 1 2 3 25 25 H 1.09001 * 109.47369 * 329.84441 * 1 2 3 26 26 H 1.09005 * 109.46973 * 89.84762 * 1 2 3 27 27 H 0.97006 * 119.99916 * 180.02562 * 6 5 3 28 28 H 1.08993 * 110.43701 * 284.01204 * 16 15 13 29 29 H 1.09004 * 110.53474 * 161.55741 * 16 15 13 30 30 H 1.09004 * 110.20896 * 106.36537 * 19 17 16 31 31 H 1.09001 * 110.77549 * 343.88165 * 19 17 16 32 32 H 1.08999 * 110.76194 * 280.23363 * 20 19 17 33 33 H 1.08997 * 110.91859 * 156.92271 * 20 19 17 34 34 H 1.09007 * 110.45141 * 203.00110 * 21 20 19 35 35 H 1.09002 * 110.56150 * 80.50192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1724 1.2208 0.3477 5 6 1.5303 2.3476 -0.4472 6 7 0.4041 2.2731 -1.1202 7 14 2.2977 4.0132 -0.0920 8 1 3.1321 4.4304 -1.2474 9 1 1.2245 5.0151 0.1310 10 1 3.1464 3.9182 1.1229 11 6 2.1389 -1.1671 -0.0005 12 8 3.3485 -1.1691 0.0892 13 6 1.3895 -2.4698 -0.1125 14 1 0.6370 -2.5437 0.6725 15 8 2.3057 -3.5869 -0.0440 16 6 1.5638 -4.6984 -0.5971 17 6 0.8492 -4.1084 -1.8340 18 1 -0.1203 -4.5702 -2.0216 19 6 1.8047 -4.1991 -3.0563 20 6 1.6894 -2.8142 -3.7390 21 6 1.6000 -1.8462 -2.5339 22 6 0.7308 -2.5955 -1.5051 23 1 -0.3027 -2.2491 -1.5072 24 1 -0.3633 -0.8914 0.5114 25 1 -0.3634 0.8886 0.5162 26 1 -0.3633 0.0027 -1.0277 27 1 -0.0286 3.0830 -1.4328 28 1 0.8343 -5.0659 0.1246 29 1 2.2405 -5.4996 -0.8946 30 1 1.4752 -4.9865 -3.7343 31 1 2.8298 -4.3803 -2.7331 32 1 0.7871 -2.7575 -4.3478 33 1 2.5734 -2.6019 -4.3403 34 1 1.1209 -0.9129 -2.8297 35 1 2.5915 -1.6514 -2.1249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368692326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:21 Heat of formation + Delta-G solvation = -93.615093 kcal Electronic energy + Delta-G solvation = -18396.912486 eV Core-core repulsion = 15587.224589 eV Total energy + Delta-G solvation = -2809.687897 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.79136 -39.53773 -36.83867 -36.37817 -33.77234 -31.65141 -30.48097 -28.25547 -27.34703 -26.16822 -24.13235 -22.10776 -20.76322 -20.41693 -18.88861 -17.93970 -17.63064 -16.74316 -16.41088 -16.22232 -15.54834 -15.37589 -15.25546 -15.05017 -14.49296 -13.88885 -13.33945 -13.20970 -13.11379 -12.70133 -12.47259 -12.41474 -12.27799 -12.13185 -12.04618 -11.97156 -11.68936 -11.64705 -11.47838 -11.02111 -10.65933 -10.19901 -9.69165 -8.34898 -5.97558 1.34613 1.39460 1.52137 1.96856 2.22655 2.67808 3.05589 3.30313 3.40302 3.62813 3.78213 4.07103 4.16111 4.26725 4.36857 4.45186 4.55141 4.57573 4.65677 4.69261 4.76975 4.88975 4.89772 5.02624 5.07257 5.18614 5.27139 5.32546 5.38131 5.44229 5.50140 5.82269 6.10929 6.49914 7.16572 7.43559 8.01913 8.67299 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.037082 B = 0.007926 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.902916 B = 3531.859188 C = 3741.199508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.453 5.453 3 C -0.346 4.346 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.888 5.888 7 Si 0.985 3.015 8 H -0.277 1.277 9 H -0.263 1.263 10 H -0.275 1.275 11 C 0.449 3.551 12 O -0.631 6.631 13 C 0.071 3.929 14 H 0.097 0.903 15 O -0.382 6.382 16 C 0.036 3.964 17 C -0.111 4.111 18 H 0.133 0.867 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.103 4.103 23 H 0.112 0.888 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.274 0.726 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 -11.116 -3.580 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.172 5.172 3 C -0.474 4.474 4 H 0.083 0.917 5 C -0.198 4.198 6 N -0.526 5.526 7 Si 0.808 3.192 8 H -0.203 1.203 9 H -0.187 1.187 10 H -0.200 1.200 11 C 0.239 3.761 12 O -0.519 6.519 13 C 0.011 3.989 14 H 0.115 0.885 15 O -0.301 6.301 16 C -0.040 4.040 17 C -0.130 4.130 18 H 0.151 0.849 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.122 4.122 23 H 0.130 0.870 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.401 -10.965 -3.529 13.178 hybrid contribution 0.530 1.333 0.231 1.453 sum -5.871 -9.632 -3.298 11.752 Atomic orbital electron populations 1.21531 0.79140 1.00147 1.01423 1.43649 1.06694 1.04001 1.62843 1.19525 0.98820 0.85653 1.43437 0.91727 1.25970 0.97013 1.02395 0.94456 1.70051 1.18540 1.30366 1.33635 0.85059 0.78205 0.77404 0.78482 1.20285 1.18700 1.19984 1.20452 0.87585 0.85895 0.82193 1.90478 1.16755 1.87823 1.56818 1.22892 0.90803 0.85725 0.99527 0.88546 1.89361 1.37735 1.19089 1.83903 1.23878 0.96194 0.89449 0.94486 1.23535 1.00895 0.92903 0.95636 0.84885 1.22598 0.98712 0.97124 0.96354 1.22467 1.02092 0.94660 0.96182 1.22314 0.98446 0.98199 0.96765 1.23156 0.99910 0.97157 0.91996 0.86984 0.91934 0.92552 0.92740 0.91586 0.90004 0.87499 0.88380 0.92979 0.89492 0.92358 0.93658 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.28 7.46 127.77 0.95 6.24 16 2 N -0.45 -24.07 3.00 -658.87 -1.98 -26.05 16 3 C -0.35 -20.35 9.31 84.04 0.78 -19.57 16 4 H 0.06 4.14 7.38 -2.91 -0.02 4.11 16 5 C 0.00 0.22 5.05 84.93 0.43 0.65 16 6 N -0.89 -46.44 10.73 21.66 0.23 -46.21 16 7 Si 0.98 43.14 29.58 68.60 2.03 45.17 16 8 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.45 23.79 4.82 87.66 0.42 24.21 16 12 O -0.63 -39.85 15.82 15.25 0.24 -39.61 16 13 C 0.07 2.85 2.57 30.38 0.08 2.92 16 14 H 0.10 3.32 7.05 -2.39 -0.02 3.31 16 15 O -0.38 -15.42 10.96 -130.68 -1.43 -16.85 16 16 C 0.04 0.93 6.86 72.51 0.50 1.42 16 17 C -0.11 -2.62 4.11 -8.65 -0.04 -2.66 16 18 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 19 C -0.11 -2.66 6.29 32.05 0.20 -2.46 16 20 C -0.12 -3.35 6.90 31.85 0.22 -3.13 16 21 C -0.12 -4.67 5.53 31.60 0.17 -4.49 16 22 C -0.10 -3.34 3.08 -9.10 -0.03 -3.37 16 23 H 0.11 3.17 7.50 -2.39 -0.02 3.15 16 24 H 0.06 2.20 6.36 -2.38 -0.02 2.19 16 25 H 0.06 2.61 6.95 -2.39 -0.02 2.60 16 26 H 0.05 2.41 7.37 -2.38 -0.02 2.39 16 27 H 0.27 13.38 8.31 -92.70 -0.77 12.61 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 2.36 7.79 -2.38 -0.02 2.35 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.05 1.45 7.64 -2.39 -0.02 1.44 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.03 1.51 6.04 -2.39 -0.01 1.50 16 Total: -1.00 -73.73 274.64 3.87 -69.87 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.08 Total: 13.90 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 3.70 Total: -0.23 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.74 Total: -72.26 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -1.19 Total: -56.46 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.73 3.87 -69.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368692326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.748 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds