Wall clock time and date at job start Sun Mar 29 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40505 * 127.47194 * 2 1 4 4 H 0.97004 * 125.99301 * 0.02911 * 3 2 1 5 5 N 1.28614 * 108.00622 * 180.31295 * 3 2 1 6 6 N 1.28390 * 111.43977 * 359.73813 * 5 3 2 7 7 C 1.36476 * 109.65507 * 0.02562 * 6 5 3 8 8 N 1.30574 * 127.07972 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 120.00521 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46678 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47258 * 119.99423 * 18 16 14 21 21 H 1.48493 * 109.47346 * 240.00028 * 18 16 14 22 22 H 1.09003 * 109.46823 * 270.11461 * 1 2 3 23 23 H 1.08998 * 109.46894 * 30.11712 * 1 2 3 24 24 H 1.09000 * 109.46992 * 150.11757 * 1 2 3 25 25 H 1.09002 * 109.47391 * 0.02562 * 9 8 7 26 26 H 1.09001 * 109.46813 * 240.00247 * 9 8 7 27 27 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 28 28 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 29 29 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 30 30 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 31 31 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 32 32 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 33 33 H 1.09001 * 109.47109 * 299.99380 * 13 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 10 9 35 35 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3198 1.1151 0.0000 4 1 2.0437 2.0450 0.0004 5 7 3.5324 0.6865 -0.0067 6 7 3.5767 -0.5966 -0.0057 7 6 2.3080 -1.0997 0.0017 8 7 1.9602 -2.3582 0.0052 9 6 2.9880 -3.4022 0.0019 10 6 2.8377 -4.2698 1.2531 11 6 2.9999 -3.3985 2.5004 12 6 1.4520 -4.9183 1.2607 13 6 3.9115 -5.3597 1.2499 14 6 3.7639 -6.2139 2.4826 15 1 2.9827 -6.0004 3.1972 16 6 4.6262 -7.2678 2.6983 17 7 5.5773 -7.5280 1.8280 18 14 4.4429 -8.3271 4.2260 19 1 3.3042 -7.8299 5.0393 20 1 4.1884 -9.7341 3.8251 21 1 5.6906 -8.2590 5.0283 22 1 -0.3633 0.0021 1.0277 23 1 -0.3633 0.8889 -0.5156 24 1 -0.3633 -0.8910 -0.5120 25 1 3.9752 -2.9402 -0.0031 26 1 2.8724 -4.0229 -0.8867 27 1 2.2352 -2.6218 2.5029 28 1 2.8933 -4.0166 3.3918 29 1 3.9871 -2.9364 2.4949 30 1 1.3364 -5.5390 0.3722 31 1 1.3452 -5.5368 2.1519 32 1 0.6874 -4.1415 1.2632 33 1 3.7964 -5.9805 0.3614 34 1 4.8986 -4.8973 1.2447 35 1 6.1837 -8.2698 1.9796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380053584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:19 Heat of formation + Delta-G solvation = 145.205997 kcal Electronic energy + Delta-G solvation = -17238.071076 eV Core-core repulsion = 14503.324741 eV Total energy + Delta-G solvation = -2734.746335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.53191 -37.19925 -35.01866 -34.34327 -32.31035 -31.02270 -27.92395 -26.78883 -26.14626 -25.49791 -23.91128 -22.81221 -21.01151 -18.81442 -17.58905 -16.63718 -16.35779 -16.07536 -15.18089 -14.38526 -13.89088 -13.63884 -13.45783 -13.29393 -12.63350 -12.43736 -12.02169 -11.87959 -11.63988 -11.35223 -10.88881 -10.74758 -10.68402 -10.66544 -10.36071 -10.26159 -10.02443 -9.56671 -9.12003 -8.79287 -8.66020 -8.21110 -7.40167 -5.85543 -3.84995 0.93786 1.08241 3.07809 3.39463 3.46744 3.48988 3.50951 4.44550 4.56871 4.64643 4.93441 5.00259 5.23977 5.50108 5.53933 5.97237 6.03809 6.18094 6.36665 6.56874 6.63187 6.73302 6.83443 6.95951 6.97386 7.03042 7.35860 7.39836 7.47346 7.84434 8.00149 8.10602 8.16181 8.42034 8.61528 9.20472 9.76908 11.26213 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.005184 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.797942 B = 5400.384818 C = 5592.689367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.464 5.464 3 N -0.337 5.337 4 H 0.467 0.533 5 N 0.096 4.904 6 N -0.312 5.312 7 C 0.462 3.538 8 N -0.537 5.537 9 C 0.080 3.920 10 C -0.051 4.051 11 C -0.119 4.119 12 C -0.116 4.116 13 C 0.033 3.967 14 C -0.503 4.503 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 18.692 -4.272 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.285 5.285 3 N -0.186 5.186 4 H 0.322 0.678 5 N 0.099 4.901 6 N -0.212 5.212 7 C 0.094 3.906 8 N -0.275 5.275 9 C -0.050 4.050 10 C -0.052 4.052 11 C -0.177 4.177 12 C -0.173 4.173 13 C -0.005 4.005 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.062 18.140 -4.310 21.187 hybrid contribution -0.461 0.007 0.833 0.952 sum -10.523 18.148 -3.477 21.264 Atomic orbital electron populations 1.21746 0.71685 1.04376 1.03048 1.48153 1.03913 0.97100 1.79377 1.47872 0.98898 1.04683 1.67178 0.67802 1.77608 1.00770 1.09474 1.02278 1.77038 1.19769 0.97852 1.26496 1.21688 0.81956 0.89507 0.97422 1.72350 1.34700 0.94182 1.26269 1.22072 0.92272 0.91322 0.99345 1.20624 0.97584 0.95167 0.91777 1.21656 0.99082 0.98064 0.98857 1.21600 0.95720 0.98872 1.01113 1.19150 0.92455 0.91789 0.97096 1.21282 1.14136 1.12277 1.06425 0.92337 1.25011 0.95568 0.97672 0.96379 1.69988 1.18344 1.29914 1.35504 0.86622 0.77822 0.80459 0.83617 1.19848 1.21206 1.21231 0.91553 0.90680 0.87965 0.92890 0.90974 0.95500 0.92229 0.94140 0.94165 0.92729 0.94235 0.96589 0.96604 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 0.94 11.60 59.85 0.69 1.64 16 2 N -0.46 -5.23 4.19 -68.50 -0.29 -5.51 16 3 N -0.34 -2.96 8.31 60.35 0.50 -2.46 16 4 H 0.47 1.62 8.96 -331.82 -2.97 -1.35 16 5 N 0.10 1.21 13.30 60.35 0.80 2.01 16 6 N -0.31 -5.18 11.41 30.19 0.34 -4.84 16 7 C 0.46 7.49 8.69 -319.67 -2.78 4.72 16 8 N -0.54 -9.80 9.07 -61.70 -0.56 -10.36 16 9 C 0.08 1.64 5.28 -4.04 -0.02 1.61 16 10 C -0.05 -1.13 0.60 -154.51 -0.09 -1.23 16 11 C -0.12 -2.59 8.06 37.16 0.30 -2.29 16 12 C -0.12 -2.45 8.06 37.16 0.30 -2.15 16 13 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 14 C -0.50 -14.41 7.65 -34.44 -0.26 -14.67 16 15 H 0.06 1.64 5.68 -52.48 -0.30 1.34 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 18 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 1.13 7.07 -51.93 -0.37 0.77 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.03 0.54 7.60 -51.93 -0.39 0.14 16 28 H 0.06 1.35 6.61 -51.93 -0.34 1.00 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.21 6.62 -51.93 -0.34 0.86 16 32 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -35.05 293.47 -8.77 -43.82 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -7.63 Total: -7.24 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.07 Total: -10.12 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 1.54 Total: -48.13 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.05 -8.77 -43.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380053584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.021 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds