Wall clock time and date at job start Sun Mar 29 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40505 * 127.47194 * 2 1 4 4 H 0.97004 * 125.99301 * 0.02911 * 3 2 1 5 5 N 1.28614 * 108.00622 * 180.31295 * 3 2 1 6 6 N 1.28390 * 111.43977 * 359.73813 * 5 3 2 7 7 C 1.36476 * 109.65507 * 0.02562 * 6 5 3 8 8 N 1.30574 * 127.07972 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99730 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46840 * 120.00521 * 9 8 7 11 11 C 1.53002 * 109.47233 * 299.99500 * 10 9 8 12 12 C 1.52996 * 109.47328 * 59.99969 * 10 9 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46678 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47258 * 119.99423 * 18 16 14 21 21 H 1.48493 * 109.47346 * 240.00028 * 18 16 14 22 22 H 1.09003 * 109.46823 * 270.11461 * 1 2 3 23 23 H 1.08998 * 109.46894 * 30.11712 * 1 2 3 24 24 H 1.09000 * 109.46992 * 150.11757 * 1 2 3 25 25 H 1.09002 * 109.47391 * 0.02562 * 9 8 7 26 26 H 1.09001 * 109.46813 * 240.00247 * 9 8 7 27 27 H 1.09000 * 109.46986 * 60.00203 * 11 10 9 28 28 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 29 29 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 30 30 H 1.08992 * 109.47554 * 59.99639 * 12 10 9 31 31 H 1.09004 * 109.47108 * 179.97438 * 12 10 9 32 32 H 1.09000 * 109.46870 * 299.99783 * 12 10 9 33 33 H 1.09001 * 109.47109 * 299.99380 * 13 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 10 9 35 35 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3198 1.1151 0.0000 4 1 2.0437 2.0450 0.0004 5 7 3.5324 0.6865 -0.0067 6 7 3.5767 -0.5966 -0.0057 7 6 2.3080 -1.0997 0.0017 8 7 1.9602 -2.3582 0.0052 9 6 2.9880 -3.4022 0.0019 10 6 2.8377 -4.2698 1.2531 11 6 2.9999 -3.3985 2.5004 12 6 1.4520 -4.9183 1.2607 13 6 3.9115 -5.3597 1.2499 14 6 3.7639 -6.2139 2.4826 15 1 2.9827 -6.0004 3.1972 16 6 4.6262 -7.2678 2.6983 17 7 5.5773 -7.5280 1.8280 18 14 4.4429 -8.3271 4.2260 19 1 3.3042 -7.8299 5.0393 20 1 4.1884 -9.7341 3.8251 21 1 5.6906 -8.2590 5.0283 22 1 -0.3633 0.0021 1.0277 23 1 -0.3633 0.8889 -0.5156 24 1 -0.3633 -0.8910 -0.5120 25 1 3.9752 -2.9402 -0.0031 26 1 2.8724 -4.0229 -0.8867 27 1 2.2352 -2.6218 2.5029 28 1 2.8933 -4.0166 3.3918 29 1 3.9871 -2.9364 2.4949 30 1 1.3364 -5.5390 0.3722 31 1 1.3452 -5.5368 2.1519 32 1 0.6874 -4.1415 1.2632 33 1 3.7964 -5.9805 0.3614 34 1 4.8986 -4.8973 1.2447 35 1 6.1837 -8.2698 1.9796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380053584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:19 Heat of formation + Delta-G solvation = 121.127775 kcal Electronic energy + Delta-G solvation = -17239.115186 eV Core-core repulsion = 14503.324741 eV Total energy + Delta-G solvation = -2735.790445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.61029 -38.88574 -36.18234 -35.55486 -34.35043 -32.30134 -29.14648 -28.58746 -27.89067 -27.02193 -25.06761 -24.67090 -22.22306 -19.96483 -19.19178 -18.30646 -17.66453 -17.35397 -16.74609 -16.23079 -15.40491 -15.08698 -14.57859 -14.51640 -14.17014 -13.90582 -13.75244 -13.37382 -12.98955 -12.79502 -12.65900 -12.61955 -12.38245 -12.27623 -12.13199 -11.88035 -11.57476 -11.40376 -10.98211 -10.81839 -10.48560 -10.16069 -8.58826 -8.10331 -6.18372 -0.11609 0.19364 1.41977 1.42321 1.55401 1.85326 2.46150 2.59733 3.22381 3.44851 3.71252 3.85150 4.27362 4.33334 4.42217 4.49478 4.63455 4.84700 4.87998 4.93830 4.98400 5.09576 5.17342 5.17817 5.29628 5.49397 5.53546 5.57698 5.71445 5.89386 5.94466 6.22139 6.37271 6.92822 6.96951 7.28053 7.48393 9.02125 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045831 B = 0.005184 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.797942 B = 5400.384818 C = 5592.689367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.449 5.449 3 N -0.283 5.283 4 H 0.494 0.506 5 N 0.101 4.899 6 N -0.377 5.377 7 C 0.466 3.534 8 N -0.572 5.572 9 C 0.097 3.903 10 C -0.048 4.048 11 C -0.103 4.103 12 C -0.103 4.103 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.960 3.040 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.282 1.282 22 H 0.080 0.920 23 H 0.122 0.878 24 H 0.094 0.906 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.061 0.939 33 H -0.012 1.012 34 H -0.018 1.018 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 20.958 -3.394 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.269 5.269 3 N -0.139 5.139 4 H 0.355 0.645 5 N 0.104 4.896 6 N -0.276 5.276 7 C 0.098 3.902 8 N -0.313 5.313 9 C -0.034 4.034 10 C -0.049 4.049 11 C -0.160 4.160 12 C -0.160 4.160 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.098 0.902 23 H 0.140 0.860 24 H 0.113 0.887 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.006 0.994 34 H 0.000 1.000 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.335 20.502 -3.432 24.171 hybrid contribution 0.156 -0.346 0.489 0.618 sum -12.179 20.156 -2.943 23.733 Atomic orbital electron populations 1.22220 0.68684 1.06384 1.04614 1.48621 1.05177 0.96427 1.76669 1.48127 0.98001 1.05557 1.62232 0.64512 1.77548 1.02013 1.08561 1.01462 1.77106 1.20363 0.98990 1.31093 1.21924 0.82811 0.90144 0.95344 1.72278 1.32615 0.94474 1.31945 1.21611 0.92279 0.91953 0.97530 1.20485 0.96577 0.94362 0.93492 1.21470 0.98854 0.97964 0.97758 1.21459 0.95361 0.99038 1.00178 1.19009 0.92503 0.92640 0.95573 1.21606 1.14150 1.12503 1.06859 0.91708 1.25952 0.95153 0.99230 0.99810 1.70136 1.19351 1.30731 1.37713 0.85471 0.78179 0.78431 0.79425 1.18492 1.20556 1.20749 0.90152 0.86014 0.88711 0.94927 0.92343 0.93637 0.93389 0.95535 0.94633 0.93967 0.92039 0.99371 0.99966 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.18 11.60 127.77 1.48 2.66 16 2 N -0.45 -8.59 4.19 -370.64 -1.55 -10.14 16 3 N -0.28 -3.88 8.31 37.02 0.31 -3.57 16 4 H 0.49 0.88 8.96 -340.26 -3.05 -2.17 16 5 N 0.10 2.35 13.30 37.02 0.49 2.84 16 6 N -0.38 -12.39 11.41 -58.39 -0.67 -13.06 16 7 C 0.47 14.59 8.69 260.39 2.26 16.85 16 8 N -0.57 -20.78 9.07 -349.11 -3.17 -23.95 16 9 C 0.10 4.17 5.28 86.38 0.46 4.62 16 10 C -0.05 -2.23 0.60 -52.18 -0.03 -2.26 16 11 C -0.10 -4.54 8.06 71.98 0.58 -3.96 16 12 C -0.10 -4.38 8.06 71.98 0.58 -3.80 16 13 C 0.04 2.29 4.04 29.85 0.12 2.41 16 14 C -0.51 -30.14 7.65 25.60 0.20 -29.94 16 15 H 0.06 3.66 5.68 -2.91 -0.02 3.64 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 18 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 22 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.03 1.48 7.07 -2.39 -0.02 1.47 16 26 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.04 1.80 7.60 -2.39 -0.02 1.78 16 28 H 0.05 2.17 6.61 -2.39 -0.02 2.16 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.86 6.62 -2.38 -0.02 1.84 16 32 H 0.06 2.33 7.60 -2.39 -0.02 2.31 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.37 293.47 1.88 -77.50 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -1.96 Total: -5.16 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 6.11 Total: -13.24 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.30 Total: -107.26 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -79.37 1.88 -77.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380053584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.624 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds