Wall clock time and date at job start Sun Mar 29 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28238 * 2 1 4 4 N 1.28669 * 109.37957 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.38134 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.27888 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46816 * 194.97349 * 6 5 4 8 8 C 1.53004 * 109.47003 * 74.98057 * 6 5 4 9 9 N 1.46896 * 109.47151 * 314.97850 * 6 5 4 10 10 C 1.46905 * 110.99602 * 205.00063 * 9 6 5 11 11 C 1.53003 * 109.46949 * 180.02562 * 10 9 6 12 12 C 1.53001 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47107 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00255 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99903 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99827 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47432 * 59.99854 * 17 15 13 19 19 H 1.48495 * 109.47354 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46774 * 300.00148 * 17 15 13 21 21 O 1.34355 * 107.43791 * 0.02562 * 5 4 3 22 22 H 1.09004 * 109.46853 * 270.02496 * 1 2 3 23 23 H 1.08997 * 109.47078 * 30.02498 * 1 2 3 24 24 H 1.09004 * 109.46818 * 150.02626 * 1 2 3 25 25 H 1.08997 * 109.46938 * 59.99535 * 8 6 5 26 26 H 1.09000 * 109.46890 * 179.97438 * 8 6 5 27 27 H 1.08997 * 109.46575 * 299.99827 * 8 6 5 28 28 H 1.00899 * 111.00223 * 81.04830 * 9 6 5 29 29 H 1.08995 * 109.47260 * 299.99917 * 10 9 6 30 30 H 1.08992 * 109.47194 * 60.00322 * 10 9 6 31 31 H 1.09003 * 109.47110 * 299.99661 * 11 10 9 32 32 H 1.09000 * 109.47167 * 59.99642 * 11 10 9 33 33 H 1.08995 * 109.47276 * 299.99864 * 12 11 10 34 34 H 1.09005 * 109.46748 * 59.99790 * 12 11 10 35 35 H 0.97003 * 119.99874 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8177 -1.4638 0.0029 7 1 4.5674 -2.4911 -0.2621 8 6 5.4485 -1.4359 1.3965 9 7 5.7698 -0.9234 -0.9765 10 6 6.6939 -1.9659 -1.4429 11 6 7.6684 -1.3663 -2.4587 12 6 8.6312 -2.4518 -2.9440 13 6 9.5906 -1.8614 -3.9450 14 1 9.5209 -0.8163 -4.2084 15 6 10.5581 -2.6551 -4.5237 16 7 10.6433 -3.9276 -4.2026 17 14 11.7477 -1.9232 -5.7640 18 1 12.5187 -0.8274 -5.1235 19 1 12.6822 -2.9767 -6.2351 20 1 10.9876 -1.3834 -6.9200 21 8 2.3022 -1.0831 0.0009 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5135 25 1 4.7419 -1.8369 2.1232 26 1 6.3540 -2.0427 1.3977 27 1 5.6986 -0.4087 1.6616 28 1 6.2743 -0.1374 -0.5947 29 1 7.2521 -2.3624 -0.5948 30 1 6.1275 -2.7697 -1.9129 31 1 7.1105 -0.9694 -3.3069 32 1 8.2347 -0.5626 -1.9883 33 1 9.1891 -2.8483 -2.0957 34 1 8.0650 -3.2558 -3.4143 35 1 11.3237 -4.4861 -4.6101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389748281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:34 Heat of formation + Delta-G solvation = 19.482368 kcal Electronic energy + Delta-G solvation = -16339.736019 eV Core-core repulsion = 13567.245147 eV Total energy + Delta-G solvation = -2772.490872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.25285 -37.53531 -36.19016 -34.21420 -32.89272 -31.82052 -29.51395 -28.08324 -26.02556 -24.59267 -22.85716 -22.35869 -21.33549 -20.19811 -17.53783 -17.24810 -16.32933 -15.63822 -15.32516 -15.03393 -14.56815 -14.31130 -13.74376 -13.50717 -13.16413 -13.04919 -12.47307 -12.38824 -12.24518 -11.93975 -11.74885 -11.72254 -11.45506 -10.91226 -10.83858 -10.62382 -10.55541 -9.73568 -9.59003 -9.33820 -9.08539 -8.42211 -8.33702 -5.99433 -4.01448 1.08474 2.09174 2.36461 3.35008 3.38884 3.42058 3.68817 4.20345 4.32869 4.48330 4.62548 4.80874 4.92425 4.94280 5.14743 5.23068 5.34883 5.36568 5.46907 5.58944 5.63207 5.69909 5.75956 5.91994 6.23294 6.63307 6.67653 7.08271 7.14214 7.44227 7.67601 7.81638 8.00583 8.28872 8.43828 9.05434 9.62650 11.11998 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049613 B = 0.003594 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.238075 B = 7787.962260 C = 7979.810546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.149 3.851 3 N -0.290 5.290 4 N -0.275 5.275 5 C 0.185 3.815 6 C 0.179 3.821 7 H 0.109 0.891 8 C -0.178 4.178 9 N -0.679 5.679 10 C 0.061 3.939 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 O -0.228 6.228 22 H 0.096 0.904 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.353 0.647 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 3.557 11.571 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 N -0.138 5.138 4 N -0.121 5.121 5 C -0.027 4.027 6 C 0.067 3.933 7 H 0.127 0.873 8 C -0.237 4.237 9 N -0.312 5.312 10 C -0.066 4.066 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 O -0.107 6.107 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.173 0.827 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.023 4.559 10.986 21.594 hybrid contribution 0.848 -0.978 0.011 1.295 sum -17.175 3.580 10.997 20.706 Atomic orbital electron populations 1.20304 0.80415 1.05611 1.04961 1.27966 0.97767 0.79878 1.00626 1.74397 0.96338 1.25740 1.17277 1.74341 1.11584 1.09300 1.16882 1.28091 0.84790 0.91668 0.98159 1.19786 0.84742 0.95676 0.93146 0.87349 1.22501 1.01917 1.03870 0.95421 1.60255 1.21077 1.11149 1.38669 1.22243 0.93171 0.93222 0.98003 1.21646 0.96133 0.99950 0.96865 1.19056 0.93163 0.93240 0.95978 1.21222 1.14690 0.96016 1.23914 0.92663 1.25022 0.97654 0.94862 0.96941 1.69952 1.34676 1.05335 1.43697 0.86648 0.80874 0.78708 0.81724 1.20231 1.21319 1.20210 1.84756 1.17632 1.38446 1.69862 0.88572 0.87661 0.89010 0.91680 0.90068 0.91065 0.82658 0.94877 0.91103 0.92402 0.93302 0.96698 0.96551 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.15 1.73 8.48 -12.94 -0.11 1.62 16 3 N -0.29 -4.30 12.22 32.55 0.40 -3.90 16 4 N -0.28 -4.37 12.22 32.55 0.40 -3.97 16 5 C 0.19 2.58 7.32 -12.94 -0.09 2.49 16 6 C 0.18 2.20 3.13 -68.86 -0.22 1.98 16 7 H 0.11 1.21 7.80 -51.93 -0.40 0.81 16 8 C -0.18 -1.78 9.14 37.16 0.34 -1.44 16 9 N -0.68 -9.90 6.23 -107.95 -0.67 -10.57 16 10 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 11 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 O -0.23 -2.93 10.87 5.39 0.06 -2.87 16 22 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 27 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.35 5.02 8.47 -39.29 -0.33 4.69 16 29 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 30 H 0.07 1.15 8.05 -51.93 -0.42 0.74 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -33.11 303.24 -5.22 -38.33 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.27 Total: -2.32 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.42 Total: -9.82 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.86 Total: -44.70 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.06 Total: -2.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.11 -5.22 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389748281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.817 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds