Wall clock time and date at job start Sun Mar 29 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30274 * 126.28238 * 2 1 4 4 N 1.28669 * 109.37957 * 179.97438 * 3 2 1 5 5 C 1.30274 * 109.38134 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.27888 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46816 * 194.97349 * 6 5 4 8 8 C 1.53004 * 109.47003 * 74.98057 * 6 5 4 9 9 N 1.46896 * 109.47151 * 314.97850 * 6 5 4 10 10 C 1.46905 * 110.99602 * 205.00063 * 9 6 5 11 11 C 1.53003 * 109.46949 * 180.02562 * 10 9 6 12 12 C 1.53001 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47107 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00255 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99903 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99827 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47432 * 59.99854 * 17 15 13 19 19 H 1.48495 * 109.47354 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46774 * 300.00148 * 17 15 13 21 21 O 1.34355 * 107.43791 * 0.02562 * 5 4 3 22 22 H 1.09004 * 109.46853 * 270.02496 * 1 2 3 23 23 H 1.08997 * 109.47078 * 30.02498 * 1 2 3 24 24 H 1.09004 * 109.46818 * 150.02626 * 1 2 3 25 25 H 1.08997 * 109.46938 * 59.99535 * 8 6 5 26 26 H 1.09000 * 109.46890 * 179.97438 * 8 6 5 27 27 H 1.08997 * 109.46575 * 299.99827 * 8 6 5 28 28 H 1.00899 * 111.00223 * 81.04830 * 9 6 5 29 29 H 1.08995 * 109.47260 * 299.99917 * 10 9 6 30 30 H 1.08992 * 109.47194 * 60.00322 * 10 9 6 31 31 H 1.09003 * 109.47110 * 299.99661 * 11 10 9 32 32 H 1.09000 * 109.47167 * 59.99642 * 11 10 9 33 33 H 1.08995 * 109.47276 * 299.99864 * 12 11 10 34 34 H 1.09005 * 109.46748 * 59.99790 * 12 11 10 35 35 H 0.97003 * 119.99874 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5654 -0.6255 0.0015 6 6 4.8177 -1.4638 0.0029 7 1 4.5674 -2.4911 -0.2621 8 6 5.4485 -1.4359 1.3965 9 7 5.7698 -0.9234 -0.9765 10 6 6.6939 -1.9659 -1.4429 11 6 7.6684 -1.3663 -2.4587 12 6 8.6312 -2.4518 -2.9440 13 6 9.5906 -1.8614 -3.9450 14 1 9.5209 -0.8163 -4.2084 15 6 10.5581 -2.6551 -4.5237 16 7 10.6433 -3.9276 -4.2026 17 14 11.7477 -1.9232 -5.7640 18 1 12.5187 -0.8274 -5.1235 19 1 12.6822 -2.9767 -6.2351 20 1 10.9876 -1.3834 -6.9200 21 8 2.3022 -1.0831 0.0009 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5135 25 1 4.7419 -1.8369 2.1232 26 1 6.3540 -2.0427 1.3977 27 1 5.6986 -0.4087 1.6616 28 1 6.2743 -0.1374 -0.5947 29 1 7.2521 -2.3624 -0.5948 30 1 6.1275 -2.7697 -1.9129 31 1 7.1105 -0.9694 -3.3069 32 1 8.2347 -0.5626 -1.9883 33 1 9.1891 -2.8483 -2.0957 34 1 8.0650 -3.2558 -3.4143 35 1 11.3237 -4.4861 -4.6101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389748281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:34 Heat of formation + Delta-G solvation = -7.659518 kcal Electronic energy + Delta-G solvation = -16340.912979 eV Core-core repulsion = 13567.245147 eV Total energy + Delta-G solvation = -2773.667832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.24009 -38.68310 -37.20202 -35.94983 -34.26853 -33.15593 -30.91160 -28.88563 -27.73863 -25.69193 -24.36772 -23.44937 -22.37846 -21.89672 -18.59612 -18.47957 -18.14639 -16.79897 -16.64323 -16.32263 -16.08007 -15.36289 -15.00842 -14.47065 -14.12734 -13.84062 -13.70937 -13.65745 -13.42489 -13.33938 -13.06557 -12.89813 -12.70707 -12.60588 -12.47227 -12.30814 -11.88757 -11.54818 -11.39266 -11.15716 -10.53576 -10.50727 -9.56672 -8.19555 -6.29837 0.14317 1.18227 1.35520 1.40632 1.43300 1.51261 2.41683 2.84981 3.11340 3.13795 3.50420 3.73241 3.90434 4.15297 4.23991 4.34568 4.37783 4.43070 4.57965 4.66701 4.68901 4.74179 4.76823 4.99312 5.06251 5.08553 5.11116 5.24454 5.52752 5.76812 5.85210 5.88610 6.26518 6.29493 6.86816 7.28755 7.39139 8.91968 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049613 B = 0.003594 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.238075 B = 7787.962260 C = 7979.810546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.163 3.837 3 N -0.332 5.332 4 N -0.307 5.307 5 C 0.179 3.821 6 C 0.181 3.819 7 H 0.121 0.879 8 C -0.170 4.170 9 N -0.688 5.688 10 C 0.077 3.923 11 C -0.095 4.095 12 C 0.027 3.973 13 C -0.546 4.546 14 H 0.056 0.944 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.962 3.038 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.269 1.269 21 O -0.232 6.232 22 H 0.121 0.879 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.355 0.645 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.051 0.949 33 H -0.003 1.003 34 H -0.006 1.006 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 3.769 11.883 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 N -0.179 5.179 4 N -0.152 5.152 5 C -0.035 4.035 6 C 0.069 3.931 7 H 0.139 0.861 8 C -0.229 4.229 9 N -0.321 5.321 10 C -0.051 4.051 11 C -0.133 4.133 12 C -0.010 4.010 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.194 1.194 21 O -0.111 6.111 22 H 0.140 0.860 23 H 0.135 0.865 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.008 4.798 11.310 22.633 hybrid contribution 1.040 -1.054 -0.068 1.482 sum -17.968 3.745 11.242 21.524 Atomic orbital electron populations 1.20710 0.76357 1.07203 1.07022 1.29124 0.99491 0.78824 0.97338 1.74329 0.96459 1.27249 1.19839 1.74256 1.12598 1.10380 1.17990 1.28294 0.85566 0.91413 0.98184 1.19904 0.83744 0.95740 0.93745 0.86107 1.22435 1.02364 1.03805 0.94284 1.60093 1.20929 1.10807 1.40246 1.21925 0.92730 0.93172 0.97313 1.21391 0.95912 0.98378 0.97639 1.18947 0.93413 0.93963 0.94725 1.21691 1.15603 0.96331 1.24769 0.92531 1.25937 0.99539 0.95246 0.98962 1.70072 1.35543 1.06677 1.44920 0.85544 0.78500 0.78131 0.79144 1.19209 1.20686 1.19415 1.84777 1.17412 1.38856 1.70076 0.86037 0.86465 0.86896 0.90114 0.89346 0.91628 0.82503 0.93645 0.91089 0.93441 0.92975 0.98432 0.98779 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.16 3.55 8.48 88.34 0.75 4.30 16 3 N -0.33 -9.70 12.22 -165.49 -2.02 -11.73 16 4 N -0.31 -9.70 12.22 -165.51 -2.02 -11.72 16 5 C 0.18 4.84 7.32 88.34 0.65 5.49 16 6 C 0.18 4.21 3.13 44.17 0.14 4.35 16 7 H 0.12 2.50 7.80 -2.39 -0.02 2.48 16 8 C -0.17 -3.13 9.14 71.98 0.66 -2.47 16 9 N -0.69 -19.52 6.23 -495.44 -3.09 -22.61 16 10 C 0.08 2.43 5.48 86.30 0.47 2.90 16 11 C -0.10 -3.89 5.41 30.60 0.17 -3.72 16 12 C 0.03 1.42 4.97 29.85 0.15 1.56 16 13 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 17 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 O -0.23 -5.64 10.87 -3.63 -0.04 -5.68 16 22 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 23 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.51 7.45 -2.39 -0.02 1.50 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.35 9.88 8.47 -89.69 -0.76 9.12 16 29 H 0.05 1.34 7.44 -2.39 -0.02 1.32 16 30 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -71.97 303.24 -0.12 -72.09 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.32 Total: 7.30 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.42 Total: -17.98 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -6.85 Total: -102.41 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.04 Total: -5.68 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -71.97 -0.12 -72.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389748281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.426 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds