Wall clock time and date at job start Sun Mar 29 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46926 * 2 1 4 4 C 1.50702 * 109.47220 * 240.00376 * 2 1 3 5 5 H 1.07995 * 120.00249 * 239.99972 * 4 2 1 6 6 C 1.37885 * 120.00094 * 59.99737 * 4 2 1 7 7 N 1.31513 * 119.99567 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47081 * 90.00236 * 8 6 4 10 10 H 1.48500 * 109.47213 * 210.00123 * 8 6 4 11 11 H 1.48497 * 109.47388 * 330.00194 * 8 6 4 12 12 N 1.46495 * 109.47423 * 120.00588 * 2 1 3 13 13 C 1.46494 * 120.00390 * 59.99436 * 12 2 1 14 14 C 1.34781 * 119.99879 * 239.99946 * 12 2 1 15 15 O 1.21611 * 120.00041 * 4.55490 * 14 12 2 16 16 C 1.47103 * 120.00123 * 184.55039 * 14 12 2 17 17 C 1.32090 * 118.87342 * 280.08549 * 16 14 12 18 18 C 1.50267 * 122.57255 * 180.02562 * 17 16 14 19 19 O 1.42893 * 110.09900 * 344.63183 * 18 17 16 20 20 C 1.43276 * 113.09683 * 50.52811 * 19 18 17 21 21 C 1.50412 * 118.87725 * 100.31377 * 16 14 12 22 22 H 1.08997 * 109.47276 * 59.99661 * 1 2 3 23 23 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47090 * 299.99677 * 1 2 3 25 25 H 0.97003 * 119.99879 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47406 * 273.03107 * 13 12 2 27 27 H 1.09001 * 109.47012 * 33.03069 * 13 12 2 28 28 H 1.08999 * 109.47517 * 153.02501 * 13 12 2 29 29 H 1.07994 * 118.71497 * 0.34172 * 17 16 14 30 30 H 1.09011 * 109.36616 * 104.82555 * 18 17 16 31 31 H 1.09005 * 109.37137 * 224.43724 * 18 17 16 32 32 H 1.09000 * 109.64103 * 50.85482 * 20 19 18 33 33 H 1.08998 * 109.63612 * 171.48001 * 20 19 18 34 34 H 1.09001 * 109.59355 * 43.42392 * 21 16 14 35 35 H 1.09003 * 109.23383 * 283.51784 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0183 -0.6907 1.1960 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0189 1.1500 1.9346 16 6 3.3660 -0.7551 3.2315 17 6 2.6033 -0.9848 4.2852 18 6 3.1026 -1.7107 5.5025 19 8 4.3238 -2.3895 5.2029 20 6 5.2963 -1.5457 4.5744 21 6 4.8016 -1.1994 3.1676 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7094 1.1620 -3.4844 26 1 0.7103 -2.1453 1.9523 27 1 1.5821 -2.6100 0.4717 28 1 2.4375 -2.5680 2.0320 29 1 1.5794 -0.6418 4.2692 30 1 3.2750 -0.9939 6.3054 31 1 2.3548 -2.4363 5.8228 32 1 5.4177 -0.6312 5.1549 33 1 6.2492 -2.0709 4.5088 34 1 5.4140 -0.3985 2.7533 35 1 4.8767 -2.0806 2.5303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408280369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:36 Heat of formation + Delta-G solvation = -65.307428 kcal Electronic energy + Delta-G solvation = -17584.806772 eV Core-core repulsion = 14776.346388 eV Total energy + Delta-G solvation = -2808.460384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86561 -38.42386 -35.32534 -33.78356 -32.60791 -31.13716 -29.38522 -26.33586 -25.67520 -25.21007 -23.85123 -21.71799 -19.38911 -17.87902 -16.86571 -16.43525 -16.20116 -15.75944 -15.08982 -14.80913 -14.34228 -14.13417 -13.54795 -13.05341 -12.72568 -12.58711 -12.41337 -12.19535 -11.66716 -11.49367 -11.44556 -11.08495 -10.83463 -10.81195 -10.72530 -10.28546 -10.18955 -9.98047 -9.20184 -9.07256 -8.75871 -8.44146 -7.61838 -6.09203 -4.17511 1.92267 3.24563 3.26266 3.32635 3.36232 3.73802 4.02388 4.38054 4.79707 4.86142 4.96627 5.18453 5.21868 5.24388 5.34271 5.50504 5.68360 5.72007 5.80108 5.95221 6.06161 6.34312 6.39371 6.68750 6.74225 6.82420 7.01377 7.04847 7.39728 7.51008 7.69489 7.99518 8.17134 8.49163 8.79361 8.99598 9.48938 10.96198 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.006308 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.953396 B = 4437.810102 C = 4663.325283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.085 3.915 14 C 0.539 3.461 15 O -0.550 6.550 16 C -0.121 4.121 17 C -0.177 4.177 18 C 0.095 3.905 19 O -0.380 6.380 20 C 0.062 3.938 21 C -0.111 4.111 22 H 0.094 0.906 23 H 0.030 0.970 24 H 0.010 0.990 25 H 0.264 0.736 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -6.702 12.754 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.059 4.059 14 C 0.325 3.675 15 O -0.430 6.430 16 C -0.125 4.125 17 C -0.197 4.197 18 C 0.019 3.981 19 O -0.299 6.299 20 C -0.015 4.015 21 C -0.149 4.149 22 H 0.112 0.888 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.712 -6.156 12.525 14.441 hybrid contribution 0.056 -0.188 -1.055 1.073 sum 3.769 -6.344 11.470 13.638 Atomic orbital electron populations 1.22071 0.98104 0.99434 1.00800 1.18977 0.91035 0.94517 0.79840 0.91938 1.21313 1.31943 1.13056 0.90241 0.92185 1.24903 0.94934 0.94968 0.98992 1.69884 1.36330 1.22519 1.23807 0.86474 0.79199 0.79288 0.82316 1.20569 1.21063 1.19916 1.48270 1.48338 1.11762 1.23073 1.21599 0.98950 0.83136 1.02199 1.18465 0.79451 0.86988 0.82583 1.90763 1.61456 1.15252 1.75502 1.21058 0.96727 0.98928 0.95740 1.23226 1.00205 1.00441 0.95794 1.21413 0.86578 0.96160 0.93957 1.88092 1.24636 1.37137 1.79991 1.22651 0.91949 0.94970 0.91889 1.20983 0.92529 1.02506 0.98834 0.88797 0.95112 0.97047 0.92642 0.93886 0.90254 0.92463 0.86210 0.91839 0.87655 0.92570 0.88210 0.89159 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.15 0.33 -3.21 16 2 C 0.26 6.67 2.63 -69.09 -0.18 6.49 16 3 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -14.34 8.01 -34.44 -0.28 -14.62 16 5 H 0.06 1.60 7.28 -52.49 -0.38 1.22 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.58 -12.88 2.75 -176.67 -0.49 -13.37 16 13 C 0.09 1.51 9.14 59.84 0.55 2.05 16 14 C 0.54 11.69 6.92 -12.66 -0.09 11.61 16 15 O -0.55 -14.23 16.44 5.27 0.09 -14.14 16 16 C -0.12 -2.01 3.82 -103.09 -0.39 -2.40 16 17 C -0.18 -2.46 9.26 -36.44 -0.34 -2.80 16 18 C 0.10 1.04 7.04 35.80 0.25 1.30 16 19 O -0.38 -4.73 10.83 -35.23 -0.38 -5.11 16 20 C 0.06 0.70 6.88 37.21 0.26 0.95 16 21 C -0.11 -1.55 6.08 -27.97 -0.17 -1.72 16 22 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 23 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 28 H 0.06 0.89 6.62 -51.93 -0.34 0.54 16 29 H 0.12 1.65 7.99 -52.49 -0.42 1.23 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -31.74 289.19 -6.06 -37.81 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.09 Total: -0.29 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.15 Total: -0.68 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.14 Total: -37.97 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.30 Total: -19.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.74 -6.06 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408280369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.500 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds