Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46926 * 2 1 4 4 C 1.50702 * 109.47220 * 240.00376 * 2 1 3 5 5 H 1.07995 * 120.00249 * 239.99972 * 4 2 1 6 6 C 1.37885 * 120.00094 * 59.99737 * 4 2 1 7 7 N 1.31513 * 119.99567 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47081 * 90.00236 * 8 6 4 10 10 H 1.48500 * 109.47213 * 210.00123 * 8 6 4 11 11 H 1.48497 * 109.47388 * 330.00194 * 8 6 4 12 12 N 1.46495 * 109.47423 * 120.00588 * 2 1 3 13 13 C 1.46494 * 120.00390 * 59.99436 * 12 2 1 14 14 C 1.34781 * 119.99879 * 239.99946 * 12 2 1 15 15 O 1.21611 * 120.00041 * 4.55490 * 14 12 2 16 16 C 1.47103 * 120.00123 * 184.55039 * 14 12 2 17 17 C 1.32090 * 118.87342 * 280.08549 * 16 14 12 18 18 C 1.50267 * 122.57255 * 180.02562 * 17 16 14 19 19 O 1.42893 * 110.09900 * 344.63183 * 18 17 16 20 20 C 1.43276 * 113.09683 * 50.52811 * 19 18 17 21 21 C 1.50412 * 118.87725 * 100.31377 * 16 14 12 22 22 H 1.08997 * 109.47276 * 59.99661 * 1 2 3 23 23 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47090 * 299.99677 * 1 2 3 25 25 H 0.97003 * 119.99879 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47406 * 273.03107 * 13 12 2 27 27 H 1.09001 * 109.47012 * 33.03069 * 13 12 2 28 28 H 1.08999 * 109.47517 * 153.02501 * 13 12 2 29 29 H 1.07994 * 118.71497 * 0.34172 * 17 16 14 30 30 H 1.09011 * 109.36616 * 104.82555 * 18 17 16 31 31 H 1.09005 * 109.37137 * 224.43724 * 18 17 16 32 32 H 1.09000 * 109.64103 * 50.85482 * 20 19 18 33 33 H 1.08998 * 109.63612 * 171.48001 * 20 19 18 34 34 H 1.09001 * 109.59355 * 43.42392 * 21 16 14 35 35 H 1.09003 * 109.23383 * 283.51784 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0183 -0.6907 1.1960 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0189 1.1500 1.9346 16 6 3.3660 -0.7551 3.2315 17 6 2.6033 -0.9848 4.2852 18 6 3.1026 -1.7107 5.5025 19 8 4.3238 -2.3895 5.2029 20 6 5.2963 -1.5457 4.5744 21 6 4.8016 -1.1994 3.1676 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7094 1.1620 -3.4844 26 1 0.7103 -2.1453 1.9523 27 1 1.5821 -2.6100 0.4717 28 1 2.4375 -2.5680 2.0320 29 1 1.5794 -0.6418 4.2692 30 1 3.2750 -0.9939 6.3054 31 1 2.3548 -2.4363 5.8228 32 1 5.4177 -0.6312 5.1549 33 1 6.2492 -2.0709 4.5088 34 1 5.4140 -0.3985 2.7533 35 1 4.8767 -2.0806 2.5303 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408280369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = -86.768275 kcal Electronic energy + Delta-G solvation = -17585.737384 eV Core-core repulsion = 14776.346388 eV Total energy + Delta-G solvation = -2809.390996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.26209 -39.70779 -37.20182 -35.22000 -34.36962 -32.10978 -31.29762 -27.79287 -27.37275 -26.90061 -24.83631 -23.40019 -20.99396 -19.22034 -18.51160 -18.04552 -17.53781 -17.30681 -16.54237 -16.05932 -15.91183 -15.59230 -14.80394 -14.61985 -14.32529 -13.99513 -13.62250 -13.56034 -13.49461 -13.11390 -12.91550 -12.75300 -12.70062 -12.50591 -12.25321 -12.15714 -11.82214 -11.25905 -11.11397 -10.59260 -10.44213 -9.98085 -9.43258 -8.18414 -6.35678 0.73492 1.39701 1.41474 1.51291 1.62216 2.29171 2.45489 2.95231 3.09560 3.57195 3.75430 3.95595 4.25406 4.28184 4.40449 4.49988 4.54865 4.65688 4.68241 4.75971 4.80042 4.85502 4.91213 4.97370 5.01156 5.23819 5.41942 5.52766 5.56533 5.61702 5.97572 6.10764 6.13427 6.71030 6.71301 7.21153 7.39044 8.86448 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.006308 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.953396 B = 4437.810102 C = 4663.325283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.007 0.993 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.591 5.591 13 C 0.086 3.914 14 C 0.532 3.468 15 O -0.607 6.607 16 C -0.153 4.153 17 C -0.146 4.146 18 C 0.094 3.906 19 O -0.388 6.388 20 C 0.068 3.932 21 C -0.109 4.109 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -9.084 14.228 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 H 0.025 0.975 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.057 4.057 14 C 0.321 3.679 15 O -0.490 6.490 16 C -0.156 4.156 17 C -0.165 4.165 18 C 0.018 3.982 19 O -0.307 6.307 20 C -0.008 4.008 21 C -0.146 4.146 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.037 -8.583 14.024 16.930 hybrid contribution -0.101 0.597 -1.445 1.567 sum 3.936 -7.986 12.579 15.411 Atomic orbital electron populations 1.21858 0.96947 1.00176 0.99961 1.18600 0.91881 0.92169 0.81625 0.97472 1.21550 1.32193 1.13187 0.91034 0.92024 1.25775 0.94987 0.95612 1.02118 1.70027 1.37222 1.23800 1.24578 0.85401 0.78876 0.78243 0.78177 1.19110 1.21008 1.19497 1.48290 1.48337 1.13359 1.21999 1.21776 1.00897 0.80514 1.02475 1.19375 0.78448 0.86577 0.83540 1.90715 1.63143 1.17978 1.77177 1.20826 0.98360 1.01720 0.94674 1.23593 0.99721 0.97587 0.95585 1.21693 0.86807 0.97123 0.92554 1.88096 1.25062 1.37693 1.79840 1.22723 0.92543 0.95709 0.89827 1.21011 0.90788 1.01850 1.00975 0.91226 0.93356 0.96246 0.92514 0.91703 0.91111 0.89929 0.86197 0.89485 0.84724 0.91689 0.85707 0.90601 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.97 71.98 0.65 -5.85 16 2 C 0.26 13.98 2.63 44.24 0.12 14.09 16 3 H 0.01 0.47 6.91 -2.38 -0.02 0.45 16 4 C -0.54 -30.02 8.01 25.60 0.21 -29.81 16 5 H 0.06 3.31 7.28 -2.91 -0.02 3.29 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.59 -26.40 2.75 -831.10 -2.29 -28.69 16 13 C 0.09 2.91 9.14 127.77 1.17 4.08 16 14 C 0.53 23.64 6.92 86.57 0.60 24.24 16 15 O -0.61 -33.12 16.44 -4.07 -0.07 -33.19 16 16 C -0.15 -4.91 3.82 -18.59 -0.07 -4.98 16 17 C -0.15 -3.66 9.26 24.59 0.23 -3.44 16 18 C 0.09 1.65 7.04 71.10 0.50 2.16 16 19 O -0.39 -8.11 10.83 -148.98 -1.61 -9.72 16 20 C 0.07 1.33 6.88 72.01 0.50 1.83 16 21 C -0.11 -2.91 6.08 29.79 0.18 -2.73 16 22 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 23 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 24 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 2.53 6.98 -2.39 -0.02 2.52 16 28 H 0.08 2.38 6.62 -2.39 -0.02 2.37 16 29 H 0.12 3.01 7.99 -2.91 -0.02 2.98 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.14 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -71.76 289.19 3.89 -67.87 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.07 Total: 10.83 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.52 Total: 0.86 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.04 Total: -81.98 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.68 Total: -42.91 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.76 3.89 -67.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408280369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.898 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds