Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00540 * 2 1 4 4 H 1.09004 * 110.33043 * 357.74819 * 3 2 1 5 5 O 1.44688 * 110.35483 * 235.41608 * 3 2 1 6 6 C 1.44420 * 105.13963 * 200.67296 * 5 3 2 7 7 C 1.54475 * 104.90092 * 40.49302 * 6 5 3 8 8 C 1.54479 * 110.37802 * 119.99734 * 3 2 1 9 9 H 1.09005 * 110.50663 * 24.16837 * 8 3 2 10 10 C 1.50697 * 110.51267 * 261.45812 * 8 3 2 11 11 O 1.21287 * 119.99955 * 336.03780 * 10 8 3 12 12 N 1.34776 * 119.99828 * 156.03461 * 10 8 3 13 13 C 1.37101 * 120.00294 * 5.47476 * 12 10 8 14 14 H 1.08002 * 119.99370 * 358.42494 * 13 12 10 15 15 C 1.38941 * 120.00006 * 178.42478 * 13 12 10 16 16 N 1.31408 * 120.00358 * 30.13187 * 15 13 12 17 17 Si 1.86802 * 119.99868 * 210.13624 * 15 13 12 18 18 H 1.48503 * 109.47380 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47338 * 210.00001 * 17 15 13 20 20 H 1.48501 * 109.47126 * 329.99946 * 17 15 13 21 21 C 1.46507 * 119.99787 * 185.46869 * 12 10 8 22 22 C 1.53001 * 109.46696 * 93.32909 * 21 12 10 23 23 H 1.08005 * 119.99617 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00027 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99617 * 179.97438 * 2 1 3 26 26 H 1.09003 * 110.36952 * 281.60541 * 6 5 3 27 27 H 1.08994 * 110.37563 * 159.38381 * 6 5 3 28 28 H 1.08996 * 110.51220 * 94.61449 * 7 6 5 29 29 H 1.09005 * 110.51247 * 217.32579 * 7 6 5 30 30 H 0.97000 * 119.99936 * 179.97438 * 16 15 13 31 31 H 1.08996 * 109.46784 * 213.33029 * 21 12 10 32 32 H 1.09000 * 109.47139 * 333.32648 * 21 12 10 33 33 H 1.08996 * 109.47456 * 53.56505 * 22 21 12 34 34 H 1.09002 * 109.46845 * 173.56577 * 22 21 12 35 35 H 1.08996 * 109.47173 * 293.56206 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3686 2.1437 -0.0402 5 8 2.9821 1.3558 -1.1168 6 6 3.9610 2.3541 -0.7551 7 6 4.2365 2.1148 0.7459 8 6 2.9596 1.4088 1.2541 9 1 3.1983 0.4161 1.6361 10 6 2.2858 2.2372 2.3174 11 8 1.4413 3.0509 2.0078 12 7 2.6215 2.0738 3.6125 13 6 3.6527 1.2370 3.9531 14 1 4.1794 0.6892 3.1857 15 6 4.0200 1.0938 5.2854 16 7 3.1200 1.2287 6.2333 17 14 5.7934 0.7095 5.7291 18 1 6.5427 1.9778 5.9170 19 1 5.8294 -0.0777 6.9878 20 1 6.4181 -0.0771 4.6353 21 6 1.8845 2.7906 4.6563 22 6 0.7511 1.9058 5.1793 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 3.5582 3.3548 -0.9121 27 1 4.8738 2.2181 -1.3349 28 1 5.1065 1.4713 0.8767 29 1 4.3803 3.0631 1.2638 30 1 3.3764 1.1283 7.1634 31 1 2.5608 3.0365 5.4748 32 1 1.4673 3.7082 4.2415 33 1 1.1556 0.9422 5.4889 34 1 0.2752 2.3909 6.0315 35 1 0.0148 1.7541 4.3900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448795299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = -48.061147 kcal Electronic energy + Delta-G solvation = -18035.793663 eV Core-core repulsion = 15228.081134 eV Total energy + Delta-G solvation = -2807.712529 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69763 -37.77324 -35.05912 -33.48455 -31.87909 -31.55082 -29.57762 -27.88409 -24.91637 -23.43399 -22.08298 -20.92709 -19.63147 -19.03817 -17.12809 -16.21331 -15.84926 -15.09293 -14.96310 -14.37957 -14.11628 -13.64265 -13.24523 -13.03504 -12.77803 -12.31203 -12.01843 -11.97814 -11.33201 -11.20531 -11.14656 -10.85834 -10.69119 -10.59278 -10.49627 -10.40415 -10.18272 -9.71395 -9.41040 -9.06542 -8.88746 -8.37234 -7.91363 -6.49597 -3.87218 2.52001 3.05317 3.18290 3.19008 3.78379 4.01192 4.35996 4.79508 4.87759 5.09834 5.30981 5.42497 5.47536 5.60905 5.80166 5.93688 6.04972 6.12512 6.18807 6.32046 6.40644 6.55001 6.61059 6.74395 6.81204 6.88639 6.99134 7.04414 7.25937 7.29397 7.37946 7.65292 7.79220 8.36746 9.00561 9.48633 9.89167 10.48685 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.009165 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.121810 B = 3054.286021 C = 3604.236149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.091 0.909 5 O -0.375 6.375 6 C 0.047 3.953 7 C -0.134 4.134 8 C -0.115 4.115 9 H 0.099 0.901 10 C 0.458 3.542 11 O -0.613 6.613 12 N -0.433 5.433 13 C -0.344 4.344 14 H 0.103 0.897 15 C 0.043 3.957 16 N -0.844 5.844 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.131 3.869 22 C -0.137 4.137 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.269 0.731 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -1.090 -5.881 6.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.054 3.946 4 H 0.109 0.891 5 O -0.295 6.295 6 C -0.030 4.030 7 C -0.172 4.172 8 C -0.137 4.137 9 H 0.117 0.883 10 C 0.246 3.754 11 O -0.501 6.501 12 N -0.150 5.150 13 C -0.471 4.471 14 H 0.120 0.880 15 C -0.163 4.163 16 N -0.481 5.481 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.194 1.194 21 C 0.008 3.992 22 C -0.195 4.195 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.864 -0.838 -5.945 6.065 hybrid contribution 0.991 -0.257 0.766 1.279 sum 1.856 -1.095 -5.179 5.609 Atomic orbital electron populations 1.23828 0.95798 1.01896 0.99870 1.22713 0.95697 0.97407 1.00107 1.22133 0.91526 0.96478 0.84429 0.89089 1.89118 1.40586 1.59482 1.40272 1.23366 0.92242 0.92311 0.95066 1.22779 0.97449 1.01712 0.95289 1.22339 0.95093 1.01176 0.95048 0.88287 1.19527 0.85577 0.86745 0.83513 1.90495 1.37783 1.40079 1.81790 1.43851 1.29048 1.38094 1.03993 1.19651 1.09050 1.25022 0.93391 0.87955 1.25153 0.98944 0.96739 0.95450 1.70282 1.31777 1.44952 1.01042 0.86231 0.83659 0.78490 0.78183 1.20256 1.21061 1.19377 1.21270 0.94297 0.93214 0.90452 1.21971 0.96509 1.03327 0.97669 0.88282 0.88255 0.87100 0.92440 0.89485 0.90451 0.90278 0.92060 0.89332 0.93870 0.89232 0.94610 0.96147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 14.33 29.01 0.42 -2.36 16 2 C -0.14 -2.43 9.10 -36.03 -0.33 -2.76 16 3 C 0.11 2.13 3.14 -27.11 -0.09 2.05 16 4 H 0.09 1.91 6.53 -51.93 -0.34 1.57 16 5 O -0.38 -6.80 11.35 -35.23 -0.40 -7.20 16 6 C 0.05 0.74 7.62 37.93 0.29 1.03 16 7 C -0.13 -2.34 6.65 -25.17 -0.17 -2.51 16 8 C -0.11 -2.33 2.07 -90.21 -0.19 -2.52 16 9 H 0.10 2.03 6.38 -51.93 -0.33 1.70 16 10 C 0.46 11.03 6.60 -10.99 -0.07 10.96 16 11 O -0.61 -16.11 15.12 5.55 0.08 -16.03 16 12 N -0.43 -10.81 2.63 -114.81 -0.30 -11.11 16 13 C -0.34 -8.46 9.16 -14.93 -0.14 -8.59 16 14 H 0.10 2.40 6.05 -52.49 -0.32 2.09 16 15 C 0.04 1.04 4.93 -17.47 -0.09 0.96 16 16 N -0.84 -20.74 8.35 55.49 0.46 -20.28 16 17 Si 0.91 18.76 29.65 -169.99 -5.04 13.72 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 C 0.13 3.19 5.46 -4.04 -0.02 3.17 16 22 C -0.14 -3.17 9.51 37.16 0.35 -2.82 16 23 H 0.10 1.59 7.86 -52.48 -0.41 1.17 16 24 H 0.10 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.45 7.73 -51.93 -0.40 1.05 16 30 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 31 H 0.09 2.22 6.00 -51.93 -0.31 1.91 16 32 H 0.04 1.06 7.26 -51.93 -0.38 0.68 16 33 H 0.09 2.24 6.31 -51.93 -0.33 1.91 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -27.58 286.23 -5.82 -33.40 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.91 Total: 6.58 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.03 Total: -3.39 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.16 Total: -31.39 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.32 Total: -23.23 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.04 Total: 13.72 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.58 -5.82 -33.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448795299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.666 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds