Wall clock time and date at job start Sun Mar 29 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00540 * 2 1 4 4 H 1.09004 * 110.33043 * 357.74819 * 3 2 1 5 5 O 1.44688 * 110.35483 * 235.41608 * 3 2 1 6 6 C 1.44420 * 105.13963 * 200.67296 * 5 3 2 7 7 C 1.54475 * 104.90092 * 40.49302 * 6 5 3 8 8 C 1.54479 * 110.37802 * 119.99734 * 3 2 1 9 9 H 1.09005 * 110.50663 * 24.16837 * 8 3 2 10 10 C 1.50697 * 110.51267 * 261.45812 * 8 3 2 11 11 O 1.21287 * 119.99955 * 336.03780 * 10 8 3 12 12 N 1.34776 * 119.99828 * 156.03461 * 10 8 3 13 13 C 1.37101 * 120.00294 * 5.47476 * 12 10 8 14 14 H 1.08002 * 119.99370 * 358.42494 * 13 12 10 15 15 C 1.38941 * 120.00006 * 178.42478 * 13 12 10 16 16 N 1.31408 * 120.00358 * 30.13187 * 15 13 12 17 17 Si 1.86802 * 119.99868 * 210.13624 * 15 13 12 18 18 H 1.48503 * 109.47380 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47338 * 210.00001 * 17 15 13 20 20 H 1.48501 * 109.47126 * 329.99946 * 17 15 13 21 21 C 1.46507 * 119.99787 * 185.46869 * 12 10 8 22 22 C 1.53001 * 109.46696 * 93.32909 * 21 12 10 23 23 H 1.08005 * 119.99617 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00027 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99617 * 179.97438 * 2 1 3 26 26 H 1.09003 * 110.36952 * 281.60541 * 6 5 3 27 27 H 1.08994 * 110.37563 * 159.38381 * 6 5 3 28 28 H 1.08996 * 110.51220 * 94.61449 * 7 6 5 29 29 H 1.09005 * 110.51247 * 217.32579 * 7 6 5 30 30 H 0.97000 * 119.99936 * 179.97438 * 16 15 13 31 31 H 1.08996 * 109.46784 * 213.33029 * 21 12 10 32 32 H 1.09000 * 109.47139 * 333.32648 * 21 12 10 33 33 H 1.08996 * 109.47456 * 53.56505 * 22 21 12 34 34 H 1.09002 * 109.46845 * 173.56577 * 22 21 12 35 35 H 1.08996 * 109.47173 * 293.56206 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3686 2.1437 -0.0402 5 8 2.9821 1.3558 -1.1168 6 6 3.9610 2.3541 -0.7551 7 6 4.2365 2.1148 0.7459 8 6 2.9596 1.4088 1.2541 9 1 3.1983 0.4161 1.6361 10 6 2.2858 2.2372 2.3174 11 8 1.4413 3.0509 2.0078 12 7 2.6215 2.0738 3.6125 13 6 3.6527 1.2370 3.9531 14 1 4.1794 0.6892 3.1857 15 6 4.0200 1.0938 5.2854 16 7 3.1200 1.2287 6.2333 17 14 5.7934 0.7095 5.7291 18 1 6.5427 1.9778 5.9170 19 1 5.8294 -0.0777 6.9878 20 1 6.4181 -0.0771 4.6353 21 6 1.8845 2.7906 4.6563 22 6 0.7511 1.9058 5.1793 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 3.5582 3.3548 -0.9121 27 1 4.8738 2.2181 -1.3349 28 1 5.1065 1.4713 0.8767 29 1 4.3803 3.0631 1.2638 30 1 3.3764 1.1283 7.1634 31 1 2.5608 3.0365 5.4748 32 1 1.4673 3.7082 4.2415 33 1 1.1556 0.9422 5.4889 34 1 0.2752 2.3909 6.0315 35 1 0.0148 1.7541 4.3900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448795299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:29 Heat of formation + Delta-G solvation = -63.868288 kcal Electronic energy + Delta-G solvation = -18036.479112 eV Core-core repulsion = 15228.081134 eV Total energy + Delta-G solvation = -2808.397978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32400 -39.46319 -36.96530 -34.80549 -33.59034 -33.30640 -31.38298 -29.29970 -26.80135 -25.10041 -23.56853 -22.57754 -21.05980 -20.82434 -18.86568 -18.02894 -17.24608 -16.71265 -16.47517 -16.10090 -15.84499 -15.39468 -14.77221 -14.57198 -14.21813 -14.15308 -13.80182 -13.49784 -13.12577 -12.88693 -12.76905 -12.47905 -12.26780 -12.17447 -12.07130 -11.96043 -11.74410 -11.60111 -10.85362 -10.76921 -10.43962 -10.22009 -9.83321 -8.33919 -5.77952 1.22345 1.40400 1.50619 1.59483 1.97248 2.28345 2.81927 3.04565 3.20187 3.70540 3.82439 4.01807 4.11021 4.27309 4.33555 4.41228 4.51571 4.64407 4.79972 4.80976 4.84553 4.89541 4.95696 5.04601 5.09957 5.11728 5.37956 5.46200 5.58476 5.72411 5.76739 5.85363 5.88565 6.47283 7.12389 7.59785 8.00748 8.65218 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.009165 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.121810 B = 3054.286021 C = 3604.236149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.164 4.164 3 C 0.116 3.884 4 H 0.065 0.935 5 O -0.379 6.379 6 C 0.047 3.953 7 C -0.132 4.132 8 C -0.113 4.113 9 H 0.097 0.903 10 C 0.447 3.553 11 O -0.644 6.644 12 N -0.443 5.443 13 C -0.366 4.366 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.864 5.864 17 Si 0.976 3.024 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.131 3.869 22 C -0.121 4.121 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.057 0.943 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.272 0.728 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -2.118 -6.313 7.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.059 3.941 4 H 0.083 0.917 5 O -0.299 6.299 6 C -0.029 4.029 7 C -0.170 4.170 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.237 3.763 11 O -0.535 6.535 12 N -0.159 5.159 13 C -0.492 4.492 14 H 0.129 0.871 15 C -0.197 4.197 16 N -0.501 5.501 17 Si 0.800 3.200 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.183 1.183 21 C 0.008 3.992 22 C -0.180 4.180 23 H 0.107 0.893 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 2.160 -1.873 -6.381 6.992 hybrid contribution 0.527 0.100 0.939 1.082 sum 2.686 -1.773 -5.442 6.322 Atomic orbital electron populations 1.24066 0.95519 1.02914 0.97852 1.22829 0.96296 0.97110 1.01964 1.21969 0.91233 0.96729 0.84200 0.91667 1.89115 1.40798 1.60068 1.39906 1.23551 0.93173 0.91883 0.94310 1.22812 0.96789 1.01173 0.96221 1.22307 0.96406 1.00383 0.94322 0.88500 1.20174 0.85383 0.86753 0.83976 1.90462 1.39166 1.41540 1.82316 1.44077 1.29335 1.38134 1.04385 1.19949 1.09395 1.25776 0.94073 0.87121 1.25933 1.02173 0.96470 0.95144 1.70342 1.33223 1.45123 1.01367 0.85195 0.78780 0.78096 0.77939 1.20443 1.21049 1.18278 1.21225 0.94486 0.93233 0.90293 1.21799 0.95811 1.02337 0.98003 0.89274 0.85215 0.85491 0.92516 0.85746 0.88391 0.91538 0.91758 0.90114 0.94813 0.90863 0.92606 0.96857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 14.33 67.78 0.97 -4.07 16 2 C -0.16 -5.48 9.10 25.64 0.23 -5.25 16 3 C 0.12 4.41 3.14 30.35 0.10 4.50 16 4 H 0.07 2.80 6.53 -2.38 -0.02 2.78 16 5 O -0.38 -13.19 11.35 -148.98 -1.69 -14.88 16 6 C 0.05 1.39 7.62 72.48 0.55 1.94 16 7 C -0.13 -4.43 6.65 31.61 0.21 -4.22 16 8 C -0.11 -4.53 2.07 -10.53 -0.02 -4.55 16 9 H 0.10 3.90 6.38 -2.38 -0.02 3.89 16 10 C 0.45 21.84 6.60 87.66 0.58 22.42 16 11 O -0.64 -34.75 15.12 -3.05 -0.05 -34.79 16 12 N -0.44 -22.31 2.63 -635.54 -1.67 -23.98 16 13 C -0.37 -17.79 9.16 84.04 0.77 -17.02 16 14 H 0.11 5.08 6.05 -2.91 -0.02 5.06 16 15 C 0.01 0.35 4.93 84.92 0.42 0.77 16 16 N -0.86 -42.09 8.35 21.66 0.18 -41.91 16 17 Si 0.98 37.47 29.65 68.60 2.03 39.51 16 18 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 21 C 0.13 6.49 5.46 86.38 0.47 6.96 16 22 C -0.12 -5.66 9.51 71.98 0.68 -4.97 16 23 H 0.09 2.85 7.86 -2.91 -0.02 2.83 16 24 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 25 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.07 2.40 7.73 -2.38 -0.02 2.38 16 30 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 31 H 0.08 4.11 6.00 -2.39 -0.01 4.09 16 32 H 0.03 1.70 7.26 -2.39 -0.02 1.68 16 33 H 0.07 3.67 6.31 -2.39 -0.02 3.66 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -58.32 286.23 4.84 -53.48 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 1.07 Total: 26.05 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 4.96 Total: -3.47 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.49 Total: -65.89 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.74 Total: -49.67 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.51 kcal Total: -58.32 4.84 -53.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448795299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.388 kcal (2) G-P(sol) polarization free energy of solvation -58.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds