Wall clock time and date at job start Sun Mar 29 2020 22:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.29043 * 125.11645 * 59.69679 * 4 2 1 6 6 N 1.40288 * 108.09925 * 179.91436 * 5 4 2 7 7 H 0.97005 * 126.76969 * 180.11236 * 6 5 4 8 8 C 1.37010 * 106.45431 * 0.34218 * 6 5 4 9 9 N 1.30685 * 126.58175 * 179.83152 * 8 6 5 10 10 C 1.46491 * 120.00436 * 359.95899 * 9 8 6 11 11 C 1.53010 * 109.47106 * 119.99701 * 10 9 8 12 12 C 1.53000 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46852 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99797 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00018 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00265 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46707 * 90.00279 * 17 15 13 19 19 H 1.48500 * 109.47326 * 210.00187 * 17 15 13 20 20 H 1.48495 * 109.46822 * 330.00508 * 17 15 13 21 21 O 1.34845 * 125.12274 * 240.00249 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.08994 * 109.47842 * 240.00467 * 10 9 8 30 30 H 1.09000 * 109.47121 * 0.02562 * 10 9 8 31 31 H 1.08991 * 109.47295 * 300.00507 * 11 10 9 32 32 H 1.09000 * 109.46545 * 60.00364 * 11 10 9 33 33 H 1.09001 * 109.47103 * 300.00150 * 12 11 10 34 34 H 1.08999 * 109.47200 * 59.99836 * 12 11 10 35 35 H 0.97000 * 119.99871 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7777 -0.3600 -2.4459 6 7 2.4219 -1.2637 -3.3041 7 1 2.4118 -1.2512 -4.2740 8 6 3.0637 -2.1703 -2.5020 9 7 3.7833 -3.1873 -2.8969 10 6 3.9642 -3.4451 -4.3275 11 6 5.4540 -3.3877 -4.6717 12 6 5.6430 -3.6564 -6.1660 13 6 7.1103 -3.6004 -6.5048 14 1 7.8356 -3.3936 -5.7317 15 6 7.5269 -3.8124 -7.8019 16 7 8.8075 -3.7641 -8.0975 17 14 6.2725 -4.1695 -9.1393 18 1 5.8273 -2.8931 -9.7539 19 1 6.8896 -5.0311 -10.1795 20 1 5.1034 -4.8682 -8.5474 21 8 2.8109 -1.8115 -1.2269 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.5728 -4.4327 -4.5712 30 1 3.4294 -2.6898 -4.9034 31 1 5.8454 -2.4001 -4.4281 32 1 5.9892 -4.1428 -4.0958 33 1 5.2515 -4.6439 -6.4100 34 1 5.1078 -2.9011 -6.7415 35 1 9.1005 -3.9129 -9.0101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450318288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:07 Heat of formation + Delta-G solvation = 38.302688 kcal Electronic energy + Delta-G solvation = -16390.608220 eV Core-core repulsion = 13618.933459 eV Total energy + Delta-G solvation = -2771.674761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.03537 -36.85664 -36.06761 -35.08702 -33.44376 -31.64073 -29.60068 -27.66578 -27.10753 -24.83367 -23.28307 -21.40592 -20.79395 -20.01237 -18.74977 -17.05183 -16.71397 -15.85666 -15.44934 -15.31304 -14.68371 -14.39348 -14.06694 -13.71601 -12.84682 -12.69181 -12.45163 -12.42759 -12.27786 -12.16060 -11.90307 -11.78865 -11.39167 -11.28677 -10.92766 -10.69337 -10.08032 -9.77470 -9.72166 -9.30467 -9.19000 -8.53140 -7.95125 -6.03023 -4.01101 1.52598 1.94709 2.34081 2.51170 3.30248 3.37837 3.41305 3.96102 4.32581 4.45536 4.51519 4.66333 4.91451 5.17247 5.26546 5.27887 5.31312 5.34790 5.42427 5.52756 5.66352 5.74977 5.80588 5.83649 6.03972 6.46502 6.59283 6.70578 6.88978 7.31789 7.42033 7.58417 7.78977 8.04078 8.56222 9.02601 9.58979 11.10566 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052630 B = 0.003829 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.889905 B = 7311.546804 C = 7368.757928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.000 4.000 3 C -0.147 4.147 4 C 0.236 3.764 5 N -0.267 5.267 6 N -0.593 5.593 7 H 0.455 0.545 8 C 0.491 3.509 9 N -0.556 5.556 10 C 0.073 3.927 11 C -0.095 4.095 12 C -0.012 4.012 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.265 1.265 21 O -0.241 6.241 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.009 0.991 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 9.244 15.985 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 C -0.205 4.205 4 C 0.007 3.993 5 N -0.094 5.094 6 N -0.343 5.343 7 H 0.305 0.695 8 C 0.178 3.822 9 N -0.303 5.303 10 C -0.055 4.055 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.190 1.190 21 O -0.128 6.128 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.572 9.056 15.768 25.992 hybrid contribution -0.426 -0.232 -1.639 1.709 sum -18.998 8.825 14.129 25.267 Atomic orbital electron populations 1.21897 0.91764 1.03146 1.03613 1.19852 0.96939 0.95462 0.89813 1.21905 1.02030 0.92984 1.03599 1.26562 0.91224 0.85503 0.96003 1.76600 1.18133 1.15438 0.99229 1.47584 1.51142 1.26286 1.09298 0.69549 1.22180 0.91750 0.89227 0.79031 1.72691 1.22920 1.15350 1.19330 1.22097 0.99705 1.00381 0.83356 1.21497 0.91401 1.01736 0.98714 1.19569 0.97968 0.96199 0.91300 1.21130 0.90945 1.48368 0.95283 0.90971 1.25044 0.95118 0.94789 0.98624 1.69920 1.14250 1.50450 1.19679 0.86763 0.82107 0.78602 0.81718 1.20372 1.21332 1.18997 1.84892 1.61256 1.41212 1.25442 0.91883 0.91189 0.90504 0.87408 0.91732 0.91173 0.90504 0.89933 0.95505 0.93032 0.91496 0.96381 0.97299 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.17 37.16 0.34 -0.42 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -0.83 9.17 37.16 0.34 -0.49 16 4 C 0.24 2.65 6.85 -13.45 -0.09 2.56 16 5 N -0.27 -3.32 12.62 32.45 0.41 -2.91 16 6 N -0.59 -8.19 7.26 29.59 0.21 -7.97 16 7 H 0.45 5.60 7.41 -182.45 -1.35 4.25 16 8 C 0.49 7.87 9.06 -88.40 -0.80 7.07 16 9 N -0.56 -10.12 10.64 -62.54 -0.67 -10.79 16 10 C 0.07 1.31 6.39 -4.04 -0.03 1.28 16 11 C -0.10 -2.04 5.48 -26.73 -0.15 -2.19 16 12 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 14 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 17 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 O -0.24 -3.47 10.74 2.67 0.03 -3.44 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.03 0.43 6.18 -51.93 -0.32 0.10 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -33.81 298.20 -6.91 -40.71 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.25 Total: -3.06 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.24 Total: -6.68 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.73 Total: -49.36 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: 0.03 Total: -3.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.81 -6.91 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450318288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.015 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds