Wall clock time and date at job start Sun Mar 29 2020 22:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.29043 * 125.11645 * 59.69679 * 4 2 1 6 6 N 1.40288 * 108.09925 * 179.91436 * 5 4 2 7 7 H 0.97005 * 126.76969 * 180.11236 * 6 5 4 8 8 C 1.37010 * 106.45431 * 0.34218 * 6 5 4 9 9 N 1.30685 * 126.58175 * 179.83152 * 8 6 5 10 10 C 1.46491 * 120.00436 * 359.95899 * 9 8 6 11 11 C 1.53010 * 109.47106 * 119.99701 * 10 9 8 12 12 C 1.53000 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46852 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99797 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00018 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00265 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46707 * 90.00279 * 17 15 13 19 19 H 1.48500 * 109.47326 * 210.00187 * 17 15 13 20 20 H 1.48495 * 109.46822 * 330.00508 * 17 15 13 21 21 O 1.34845 * 125.12274 * 240.00249 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.08994 * 109.47842 * 240.00467 * 10 9 8 30 30 H 1.09000 * 109.47121 * 0.02562 * 10 9 8 31 31 H 1.08991 * 109.47295 * 300.00507 * 11 10 9 32 32 H 1.09000 * 109.46545 * 60.00364 * 11 10 9 33 33 H 1.09001 * 109.47103 * 300.00150 * 12 11 10 34 34 H 1.08999 * 109.47200 * 59.99836 * 12 11 10 35 35 H 0.97000 * 119.99871 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7777 -0.3600 -2.4459 6 7 2.4219 -1.2637 -3.3041 7 1 2.4118 -1.2512 -4.2740 8 6 3.0637 -2.1703 -2.5020 9 7 3.7833 -3.1873 -2.8969 10 6 3.9642 -3.4451 -4.3275 11 6 5.4540 -3.3877 -4.6717 12 6 5.6430 -3.6564 -6.1660 13 6 7.1103 -3.6004 -6.5048 14 1 7.8356 -3.3936 -5.7317 15 6 7.5269 -3.8124 -7.8019 16 7 8.8075 -3.7641 -8.0975 17 14 6.2725 -4.1695 -9.1393 18 1 5.8273 -2.8931 -9.7539 19 1 6.8896 -5.0311 -10.1795 20 1 5.1034 -4.8682 -8.5474 21 8 2.8109 -1.8115 -1.2269 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.5728 -4.4327 -4.5712 30 1 3.4294 -2.6898 -4.9034 31 1 5.8454 -2.4001 -4.4281 32 1 5.9892 -4.1428 -4.0958 33 1 5.2515 -4.6439 -6.4100 34 1 5.1078 -2.9011 -6.7415 35 1 9.1005 -3.9129 -9.0101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450318288.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:07 Heat of formation + Delta-G solvation = 10.351702 kcal Electronic energy + Delta-G solvation = -16391.820266 eV Core-core repulsion = 13618.933459 eV Total energy + Delta-G solvation = -2772.886807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.12129 -38.02106 -36.96448 -36.31206 -35.21874 -33.52138 -30.82854 -28.81927 -28.07730 -25.96447 -24.70694 -22.80658 -21.94378 -21.47825 -19.72560 -18.92917 -18.14455 -17.14901 -16.51398 -16.31637 -16.09552 -15.85986 -15.20396 -14.85016 -14.40983 -14.04883 -13.81647 -13.46574 -13.22037 -13.07834 -12.95174 -12.76249 -12.72261 -12.35667 -12.05652 -11.90715 -11.84973 -11.61248 -11.59518 -11.36025 -10.78829 -10.61390 -9.17422 -8.31394 -6.37015 0.60729 0.84622 1.08483 1.35008 1.38266 1.50500 1.56886 2.35332 3.03463 3.04396 3.54110 3.93503 4.02474 4.04077 4.14422 4.23437 4.43263 4.48482 4.61073 4.75132 4.82079 4.90086 4.93618 4.94036 5.00205 5.09305 5.33591 5.34926 5.43619 5.50166 5.57508 5.63504 6.25540 6.52623 6.69974 6.81016 7.27453 8.85899 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052630 B = 0.003829 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.889905 B = 7311.546804 C = 7368.757928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 C -0.145 4.145 4 C 0.243 3.757 5 N -0.279 5.279 6 N -0.590 5.590 7 H 0.460 0.540 8 C 0.495 3.505 9 N -0.595 5.595 10 C 0.084 3.916 11 C -0.086 4.086 12 C -0.007 4.007 13 C -0.538 4.538 14 H 0.025 0.975 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.242 1.242 21 O -0.250 6.250 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.127 0.873 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.025 0.975 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.813 9.925 16.304 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 C -0.202 4.202 4 C 0.015 3.985 5 N -0.106 5.106 6 N -0.340 5.340 7 H 0.311 0.689 8 C 0.182 3.818 9 N -0.345 5.345 10 C -0.045 4.045 11 C -0.124 4.124 12 C -0.045 4.045 13 C -0.576 4.576 14 H 0.043 0.957 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.165 1.165 21 O -0.137 6.137 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.608 9.771 16.110 28.669 hybrid contribution 0.550 -0.333 -1.572 1.698 sum -21.058 9.437 14.538 27.274 Atomic orbital electron populations 1.21911 0.90308 1.03172 1.04617 1.20272 0.97924 0.95631 0.88343 1.21924 1.01396 0.92284 1.04633 1.27746 0.89455 0.84116 0.97198 1.76656 1.18939 1.15438 0.99518 1.47608 1.50645 1.25994 1.09705 0.68897 1.22204 0.90899 0.88757 0.79906 1.72619 1.25422 1.17251 1.19159 1.21838 0.96789 1.01681 0.84152 1.21296 0.94321 1.00157 0.96665 1.19489 0.94567 0.97081 0.93367 1.21482 0.93027 1.48492 0.94629 0.95702 1.26125 0.97549 0.94283 1.01627 1.70087 1.16919 1.51745 1.20673 0.85548 0.79478 0.79183 0.77764 1.18864 1.20909 1.16495 1.84913 1.61669 1.42298 1.24841 0.92348 0.92018 0.87674 0.85525 0.92748 0.92042 0.87586 0.89129 0.93373 0.94536 0.93328 0.95391 0.95660 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 71.98 0.66 -0.42 16 2 C 0.00 -0.02 3.39 -11.54 -0.04 -0.05 16 3 C -0.14 -1.27 9.17 71.98 0.66 -0.61 16 4 C 0.24 5.06 6.85 88.52 0.61 5.67 16 5 N -0.28 -6.54 12.62 -166.15 -2.10 -8.63 16 6 N -0.59 -15.52 7.26 -171.07 -1.24 -16.76 16 7 H 0.46 10.62 7.41 -213.19 -1.58 9.04 16 8 C 0.49 15.44 9.06 179.57 1.63 17.07 16 9 N -0.60 -21.38 10.64 -465.89 -4.96 -26.34 16 10 C 0.08 2.91 6.39 86.38 0.55 3.47 16 11 C -0.09 -3.72 5.48 30.60 0.17 -3.55 16 12 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 13 C -0.54 -32.51 9.66 25.60 0.25 -32.26 16 14 H 0.02 1.67 7.99 -2.91 -0.02 1.64 16 15 C 0.00 0.03 5.47 84.65 0.46 0.50 16 16 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 17 Si 0.96 44.66 27.47 68.60 1.88 46.54 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 21 O -0.25 -6.92 10.74 -13.36 -0.14 -7.06 16 22 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.10 0.24 8.14 -2.38 -0.02 0.23 16 25 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.05 1.44 6.18 -2.39 -0.01 1.42 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 34 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -74.79 298.20 -1.75 -76.53 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.55 Total: 7.40 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.06 Total: -10.42 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -8.00 Total: -112.99 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.14 Total: -7.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -74.79 -1.75 -76.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450318288.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.886 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds