Wall clock time and date at job start Sun Mar 29 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00221 * 2 1 4 4 C 1.53003 * 109.47038 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47321 * 62.33362 * 4 3 2 6 6 C 1.37099 * 120.00011 * 92.24509 * 5 4 3 7 7 H 1.07998 * 120.00169 * 218.95467 * 6 5 4 8 8 C 1.38949 * 119.99743 * 38.94922 * 6 5 4 9 9 N 1.31420 * 120.00183 * 213.07985 * 8 6 5 10 10 Si 1.86802 * 120.00020 * 33.08774 * 8 6 5 11 11 H 1.48500 * 109.47272 * 95.26366 * 10 8 6 12 12 H 1.48497 * 109.46885 * 215.26746 * 10 8 6 13 13 H 1.48496 * 109.46779 * 335.26234 * 10 8 6 14 14 C 1.34775 * 120.00255 * 271.97458 * 5 4 3 15 15 O 1.21288 * 119.99984 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99994 * 179.97438 * 14 5 4 17 17 C 1.54625 * 111.03809 * 292.02110 * 16 14 5 18 18 C 1.51100 * 104.72666 * 217.33622 * 17 16 14 19 19 C 1.30524 * 111.10496 * 16.43207 * 18 17 16 20 20 C 1.51100 * 111.10525 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47155 * 59.99341 * 1 2 3 22 22 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46277 * 299.99651 * 1 2 3 24 24 H 1.09001 * 109.46693 * 60.01037 * 3 2 1 25 25 H 1.08997 * 109.47362 * 300.00725 * 3 2 1 26 26 H 1.09006 * 109.46997 * 302.33429 * 4 3 2 27 27 H 1.08995 * 109.47277 * 182.33853 * 4 3 2 28 28 H 0.97000 * 120.00178 * 180.02562 * 9 8 6 29 29 H 1.09005 * 110.91567 * 56.03467 * 16 14 5 30 30 H 1.08998 * 110.38791 * 336.14534 * 17 16 14 31 31 H 1.08998 * 110.39157 * 98.52089 * 17 16 14 32 32 H 1.08003 * 124.45186 * 196.46137 * 18 17 16 33 33 H 1.08005 * 124.45324 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.38696 * 224.75036 * 20 19 18 35 35 H 1.09001 * 110.48683 * 102.41979 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9712 0.5069 -1.2242 6 6 4.3021 1.2410 -2.3337 7 1 4.0230 0.8904 -3.3163 8 6 4.9966 2.4364 -2.1940 9 7 4.7777 3.4253 -3.0314 10 14 6.2416 2.6378 -0.8160 11 1 7.6004 2.3251 -1.3268 12 1 6.2090 4.0371 -0.3201 13 1 5.9049 1.7112 0.2945 14 6 4.0519 -0.8381 -1.2574 15 8 3.7643 -1.4874 -0.2742 16 6 4.4996 -1.5352 -2.5163 17 6 3.4497 -1.3789 -3.6407 18 6 3.4625 -2.7048 -4.3652 19 6 4.0446 -3.6268 -3.6478 20 6 4.5164 -3.0697 -2.3248 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.6888 1.8462 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 3.8547 0.6077 0.8675 27 1 3.9789 2.1793 0.0413 28 1 5.2627 4.2597 -2.9341 29 1 5.4751 -1.1699 -2.8375 30 1 2.4641 -1.1878 -3.2161 31 1 3.7350 -0.5735 -4.3175 32 1 3.0453 -2.8681 -5.3479 33 1 4.1722 -4.6532 -3.9587 34 1 5.5275 -3.4137 -2.1069 35 1 3.8364 -3.3604 -1.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:54 Heat of formation + Delta-G solvation = -50.452548 kcal Electronic energy + Delta-G solvation = -18081.539051 eV Core-core repulsion = 15273.722823 eV Total energy + Delta-G solvation = -2807.816228 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.32563 -37.46844 -36.47961 -34.69643 -31.99442 -29.99488 -28.23525 -27.49977 -25.77810 -24.76565 -22.64375 -20.78324 -18.58431 -18.30954 -17.04263 -16.15624 -15.83721 -15.43117 -15.37315 -14.59899 -14.51506 -14.04517 -13.39610 -12.76773 -12.50318 -12.13070 -12.06481 -11.93119 -11.63659 -11.37414 -11.12159 -10.96852 -10.79159 -10.68316 -10.43108 -10.35820 -10.26256 -9.85380 -9.12462 -8.99243 -8.39627 -8.32688 -7.64882 -6.54875 -3.99760 2.70883 3.10021 3.23935 3.32276 3.89484 4.15250 4.40317 4.50414 4.92122 5.21845 5.34791 5.62191 5.70665 5.77156 5.85161 5.89328 5.96004 6.01410 6.03157 6.12862 6.31226 6.34267 6.45114 6.49634 6.55254 6.60248 6.74700 6.95624 6.97793 7.37209 7.40155 7.80603 8.16142 8.35825 9.03774 9.48238 9.87508 10.56236 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.011780 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.226836 B = 2376.330968 C = 3221.499098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.461 5.461 6 C -0.356 4.356 7 H 0.108 0.892 8 C 0.075 3.925 9 N -0.844 5.844 10 Si 0.846 3.154 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.256 1.256 14 C 0.495 3.505 15 O -0.580 6.580 16 C -0.090 4.090 17 C -0.081 4.081 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.088 4.088 21 H 0.034 0.966 22 H 0.077 0.923 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.274 0.726 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.062 0.938 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -5.070 0.808 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.182 5.182 6 C -0.482 4.482 7 H 0.125 0.875 8 C -0.133 4.133 9 N -0.477 5.477 10 Si 0.671 3.329 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.180 1.180 14 C 0.284 3.716 15 O -0.464 6.464 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.186 4.186 19 C -0.190 4.190 20 C -0.126 4.126 21 H 0.052 0.948 22 H 0.095 0.905 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.442 -5.320 1.236 6.455 hybrid contribution 0.526 0.747 0.413 1.003 sum -2.916 -4.573 1.649 5.668 Atomic orbital electron populations 1.22636 0.83100 1.01756 0.98971 1.88144 1.17672 1.27324 1.95112 1.22984 0.95490 0.84867 0.99452 1.21566 0.91352 0.97477 0.90004 1.43498 1.58719 1.04259 1.11715 1.19164 1.37513 1.04073 0.87454 0.87514 1.25349 0.96604 0.94769 0.96596 1.69962 1.36900 1.02413 1.38448 0.87380 0.83686 0.77938 0.83924 1.20280 1.20872 1.18002 1.20131 0.79883 0.82707 0.88881 1.90528 1.53432 1.65538 1.36872 1.21780 1.00508 0.94351 0.94528 1.21245 0.99132 0.95455 0.95950 1.23352 1.00111 0.96210 0.98878 1.23271 1.00653 0.98526 0.96571 1.21294 1.01335 0.93861 0.96071 0.94755 0.90467 0.95111 0.94208 0.92592 0.91053 0.90567 0.91632 0.88531 0.90818 0.90099 0.86485 0.86580 0.91922 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.65 9.17 -48.06 -0.44 -8.09 16 3 C 0.05 1.00 6.30 37.16 0.23 1.24 16 4 C 0.12 2.69 4.23 -4.04 -0.02 2.67 16 5 N -0.46 -11.12 2.10 -114.81 -0.24 -11.36 16 6 C -0.36 -8.98 8.71 -14.93 -0.13 -9.11 16 7 H 0.11 2.78 5.25 -52.49 -0.28 2.50 16 8 C 0.08 1.93 5.03 -17.46 -0.09 1.84 16 9 N -0.84 -22.44 13.96 55.50 0.77 -21.67 16 10 Si 0.85 19.47 26.32 -169.99 -4.47 14.99 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.26 -5.88 5.98 56.52 0.34 -5.55 16 14 C 0.49 11.78 6.47 -10.98 -0.07 11.71 16 15 O -0.58 -14.94 14.14 -7.28 -0.10 -15.05 16 16 C -0.09 -1.85 2.70 -90.05 -0.24 -2.10 16 17 C -0.08 -1.52 5.26 -26.83 -0.14 -1.67 16 18 C -0.17 -2.68 10.77 -35.70 -0.38 -3.06 16 19 C -0.17 -2.69 10.77 -35.70 -0.38 -3.08 16 20 C -0.09 -1.60 6.18 -26.82 -0.17 -1.76 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.63 7.48 -51.93 -0.39 1.25 16 27 H 0.08 1.68 4.65 -51.93 -0.24 1.43 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.10 1.99 8.03 -51.93 -0.42 1.57 16 30 H 0.07 1.50 7.88 -51.93 -0.41 1.09 16 31 H 0.08 1.56 6.64 -51.93 -0.34 1.22 16 32 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.79 6.96 -51.93 -0.36 1.43 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -29.06 283.47 -5.51 -34.57 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.02 Total: 4.02 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.28 Total: -1.69 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.53 Total: -33.03 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.54 Total: -23.14 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.47 Total: 14.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.06 -5.51 -34.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.885 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds