Wall clock time and date at job start Sun Mar 29 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00221 * 2 1 4 4 C 1.53003 * 109.47038 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47321 * 62.33362 * 4 3 2 6 6 C 1.37099 * 120.00011 * 92.24509 * 5 4 3 7 7 H 1.07998 * 120.00169 * 218.95467 * 6 5 4 8 8 C 1.38949 * 119.99743 * 38.94922 * 6 5 4 9 9 N 1.31420 * 120.00183 * 213.07985 * 8 6 5 10 10 Si 1.86802 * 120.00020 * 33.08774 * 8 6 5 11 11 H 1.48500 * 109.47272 * 95.26366 * 10 8 6 12 12 H 1.48497 * 109.46885 * 215.26746 * 10 8 6 13 13 H 1.48496 * 109.46779 * 335.26234 * 10 8 6 14 14 C 1.34775 * 120.00255 * 271.97458 * 5 4 3 15 15 O 1.21288 * 119.99984 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99994 * 179.97438 * 14 5 4 17 17 C 1.54625 * 111.03809 * 292.02110 * 16 14 5 18 18 C 1.51100 * 104.72666 * 217.33622 * 17 16 14 19 19 C 1.30524 * 111.10496 * 16.43207 * 18 17 16 20 20 C 1.51100 * 111.10525 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47155 * 59.99341 * 1 2 3 22 22 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46277 * 299.99651 * 1 2 3 24 24 H 1.09001 * 109.46693 * 60.01037 * 3 2 1 25 25 H 1.08997 * 109.47362 * 300.00725 * 3 2 1 26 26 H 1.09006 * 109.46997 * 302.33429 * 4 3 2 27 27 H 1.08995 * 109.47277 * 182.33853 * 4 3 2 28 28 H 0.97000 * 120.00178 * 180.02562 * 9 8 6 29 29 H 1.09005 * 110.91567 * 56.03467 * 16 14 5 30 30 H 1.08998 * 110.38791 * 336.14534 * 17 16 14 31 31 H 1.08998 * 110.39157 * 98.52089 * 17 16 14 32 32 H 1.08003 * 124.45186 * 196.46137 * 18 17 16 33 33 H 1.08005 * 124.45324 * 180.02562 * 19 18 17 34 34 H 1.09001 * 110.38696 * 224.75036 * 20 19 18 35 35 H 1.09001 * 110.48683 * 102.41979 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9712 0.5069 -1.2242 6 6 4.3021 1.2410 -2.3337 7 1 4.0230 0.8904 -3.3163 8 6 4.9966 2.4364 -2.1940 9 7 4.7777 3.4253 -3.0314 10 14 6.2416 2.6378 -0.8160 11 1 7.6004 2.3251 -1.3268 12 1 6.2090 4.0371 -0.3201 13 1 5.9049 1.7112 0.2945 14 6 4.0519 -0.8381 -1.2574 15 8 3.7643 -1.4874 -0.2742 16 6 4.4996 -1.5352 -2.5163 17 6 3.4497 -1.3789 -3.6407 18 6 3.4625 -2.7048 -4.3652 19 6 4.0446 -3.6268 -3.6478 20 6 4.5164 -3.0697 -2.3248 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.6888 1.8462 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 3.8547 0.6077 0.8675 27 1 3.9789 2.1793 0.0413 28 1 5.2627 4.2597 -2.9341 29 1 5.4751 -1.1699 -2.8375 30 1 2.4641 -1.1878 -3.2161 31 1 3.7350 -0.5735 -4.3175 32 1 3.0453 -2.8681 -5.3479 33 1 4.1722 -4.6532 -3.9587 34 1 5.5275 -3.4137 -2.1069 35 1 3.8364 -3.3604 -1.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:53 Heat of formation + Delta-G solvation = -67.659057 kcal Electronic energy + Delta-G solvation = -18082.285181 eV Core-core repulsion = 15273.722823 eV Total energy + Delta-G solvation = -2808.562359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06658 -38.99554 -38.06255 -36.60107 -33.95844 -31.63025 -29.75337 -28.95903 -27.16616 -26.72125 -24.28373 -22.44619 -20.45285 -19.64684 -18.79899 -17.90372 -17.50244 -17.04716 -16.80826 -16.33299 -16.16539 -15.69652 -15.15973 -14.55525 -14.32593 -13.71844 -13.65952 -13.52897 -13.09251 -12.97603 -12.71767 -12.68186 -12.39527 -12.26244 -12.00642 -11.93781 -11.89938 -11.66504 -11.02140 -10.54724 -10.24476 -9.70881 -9.58457 -8.53704 -6.00217 1.24097 1.36675 1.44934 1.46330 2.03078 2.23462 2.63606 2.95904 3.05540 3.79802 3.91664 4.18729 4.21068 4.26758 4.40728 4.46380 4.51326 4.53891 4.57453 4.63022 4.78830 4.80344 4.89614 4.95817 4.99610 5.12086 5.14452 5.36736 5.49846 5.64159 6.13265 6.20936 6.32044 6.42141 7.05827 7.55327 7.96925 8.60725 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.011780 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.226836 B = 2376.330968 C = 3221.499098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.112 3.888 5 N -0.467 5.467 6 C -0.355 4.355 7 H 0.092 0.908 8 C 0.045 3.955 9 N -0.875 5.875 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.272 1.272 13 H -0.258 1.258 14 C 0.487 3.513 15 O -0.604 6.604 16 C -0.098 4.098 17 C -0.076 4.076 18 C -0.170 4.170 19 C -0.160 4.160 20 C -0.087 4.087 21 H 0.039 0.961 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.279 0.721 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -5.912 0.806 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.021 4.021 4 C -0.012 4.012 5 N -0.188 5.188 6 C -0.482 4.482 7 H 0.110 0.890 8 C -0.161 4.161 9 N -0.510 5.510 10 Si 0.721 3.279 11 H -0.205 1.205 12 H -0.197 1.197 13 H -0.183 1.183 14 C 0.277 3.723 15 O -0.488 6.488 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.188 4.188 19 C -0.177 4.177 20 C -0.125 4.125 21 H 0.058 0.942 22 H 0.107 0.893 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.095 0.905 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.539 -6.152 1.237 7.204 hybrid contribution 0.501 1.000 0.434 1.200 sum -3.038 -5.151 1.671 6.210 Atomic orbital electron populations 1.22851 0.80571 1.03063 1.00398 1.88086 1.20540 1.27729 1.95388 1.22860 0.93819 0.84994 1.00415 1.21676 0.93353 0.97151 0.89010 1.43621 1.58808 1.04535 1.11860 1.19087 1.37641 1.04060 0.87420 0.89016 1.25753 0.97432 0.94482 0.98440 1.69992 1.37875 1.03011 1.40167 0.86587 0.81431 0.78235 0.81674 1.20485 1.19750 1.18265 1.20689 0.79294 0.82644 0.89663 1.90498 1.54479 1.65882 1.37991 1.21849 1.00525 0.95940 0.93586 1.21128 0.97351 0.97364 0.95471 1.23422 1.00937 0.94213 1.00193 1.23434 0.99543 1.00114 0.94646 1.21273 1.01920 0.92046 0.97226 0.94240 0.89323 0.92652 0.90878 0.93806 0.91858 0.90395 0.91088 0.88917 0.93006 0.91169 0.83357 0.82814 0.90517 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.56 9.17 -136.71 -1.25 -17.81 16 3 C 0.06 2.25 6.30 71.98 0.45 2.70 16 4 C 0.11 5.01 4.23 86.38 0.37 5.37 16 5 N -0.47 -22.79 2.10 -635.55 -1.33 -24.12 16 6 C -0.36 -18.21 8.71 84.04 0.73 -17.48 16 7 H 0.09 4.92 5.25 -2.91 -0.02 4.90 16 8 C 0.05 2.32 5.03 84.92 0.43 2.75 16 9 N -0.88 -46.70 13.96 21.66 0.30 -46.40 16 10 Si 0.90 40.00 26.32 68.60 1.81 41.81 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.26 -11.56 5.98 99.48 0.59 -10.96 16 14 C 0.49 23.48 6.47 87.66 0.57 24.05 16 15 O -0.60 -31.44 14.14 9.21 0.13 -31.31 16 16 C -0.10 -4.03 2.70 -10.42 -0.03 -4.05 16 17 C -0.08 -2.87 5.26 30.53 0.16 -2.71 16 18 C -0.17 -5.05 10.77 26.26 0.28 -4.77 16 19 C -0.16 -4.53 10.77 26.26 0.28 -4.25 16 20 C -0.09 -3.06 6.18 30.54 0.19 -2.87 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 2.91 7.48 -2.38 -0.02 2.89 16 27 H 0.08 3.40 4.65 -2.39 -0.01 3.38 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.09 3.84 8.03 -2.38 -0.02 3.82 16 30 H 0.05 2.16 7.88 -2.39 -0.02 2.14 16 31 H 0.07 2.76 6.64 -2.39 -0.02 2.75 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.78 6.96 -2.39 -0.02 2.76 16 Total: -1.00 -62.00 283.47 5.29 -56.71 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.96 Total: 20.31 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.68 Total: 0.82 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.03 Total: -70.52 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -1.12 Total: -49.12 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.81 Total: 41.81 kcal Total: -62.00 5.29 -56.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.951 kcal (2) G-P(sol) polarization free energy of solvation -62.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds