Wall clock time and date at job start Sun Mar 29 2020 22:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99661 * 2 1 4 4 C 1.53007 * 109.46760 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47355 * 64.99761 * 4 3 2 6 6 C 1.36939 * 120.00073 * 270.00079 * 5 4 3 7 7 H 1.07998 * 119.99923 * 146.31814 * 6 5 4 8 8 C 1.38816 * 119.99442 * 326.31879 * 6 5 4 9 9 N 1.31616 * 120.00315 * 336.42918 * 8 6 5 10 10 Si 1.86803 * 119.99510 * 156.43036 * 8 6 5 11 11 H 1.48495 * 109.47059 * 89.99884 * 10 8 6 12 12 H 1.48497 * 109.46937 * 209.99790 * 10 8 6 13 13 H 1.48498 * 109.47060 * 329.99503 * 10 8 6 14 14 C 1.46500 * 119.99928 * 89.99632 * 5 4 3 15 15 C 1.50699 * 109.47016 * 95.50823 * 14 5 4 16 16 C 1.35324 * 126.12380 * 95.01945 * 15 14 5 17 17 C 1.39875 * 107.91755 * 180.24075 * 16 15 14 18 18 N 1.30841 * 108.19974 * 359.56117 * 17 16 15 19 19 N 1.34945 * 126.12871 * 275.00163 * 15 14 5 20 20 C 1.46497 * 126.03828 * 359.97438 * 19 15 14 21 21 H 1.09003 * 109.46626 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46929 * 300.00063 * 1 2 3 23 23 H 1.09000 * 109.47175 * 60.00855 * 1 2 3 24 24 H 1.08996 * 109.47492 * 59.99647 * 3 2 1 25 25 H 1.08996 * 109.46923 * 299.99487 * 3 2 1 26 26 H 1.08999 * 109.46746 * 304.99512 * 4 3 2 27 27 H 1.09003 * 109.46501 * 184.99578 * 4 3 2 28 28 H 0.97000 * 119.99686 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.47123 * 335.50751 * 14 5 4 30 30 H 1.09000 * 109.46969 * 215.50498 * 14 5 4 31 31 H 1.07992 * 126.04536 * 359.97438 * 16 15 14 32 32 H 1.07998 * 125.89733 * 179.73398 * 17 16 15 33 33 H 1.08997 * 109.47184 * 89.99693 * 20 19 15 34 34 H 1.08999 * 109.47355 * 210.00652 * 20 19 15 35 35 H 1.09009 * 109.46855 * 330.00013 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0979 -0.7975 -1.3343 7 1 3.8834 -1.3027 -2.2645 8 6 4.4964 -1.5282 -0.2233 9 7 5.1873 -0.9463 0.7339 10 14 4.0519 -3.3375 -0.0870 11 1 5.1251 -4.1586 -0.7028 12 1 3.9072 -3.7051 1.3445 13 1 2.7702 -3.5870 -0.7942 14 6 4.2883 1.3997 -2.4130 15 6 5.7706 1.6682 -2.4557 16 6 6.6881 0.9679 -3.1622 17 6 7.9427 1.5380 -2.9221 18 7 7.7827 2.5501 -2.1085 19 7 6.4207 2.6500 -1.7967 20 6 5.8098 3.6454 -0.9122 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8507 0.5686 0.8428 27 1 3.9784 2.1766 0.0901 28 1 5.4661 -1.4571 1.5100 29 1 3.7500 2.3444 -2.3359 30 1 3.9863 0.8827 -3.3238 31 1 6.4878 0.1166 -3.7956 32 1 8.8808 1.2025 -3.3388 33 1 5.7948 3.2638 0.1087 34 1 6.3901 4.5674 -0.9471 35 1 4.7897 3.8456 -1.2403 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489836094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:02 Heat of formation + Delta-G solvation = 61.951714 kcal Electronic energy + Delta-G solvation = -17884.462051 eV Core-core repulsion = 15113.812788 eV Total energy + Delta-G solvation = -2770.649263 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30117 -37.24851 -35.36779 -32.56062 -31.52438 -30.25136 -28.27550 -26.08932 -25.67926 -25.44656 -23.03931 -20.76302 -20.26919 -18.82045 -16.81386 -16.00273 -15.62006 -15.16199 -14.83511 -14.47500 -14.06111 -13.80159 -13.38867 -13.27348 -12.99026 -12.47440 -12.09537 -11.90023 -11.69564 -11.31032 -11.14826 -10.81139 -10.73810 -10.66794 -10.17899 -10.02755 -9.81130 -9.75087 -8.87752 -8.45941 -8.43217 -7.62366 -6.65994 -5.73748 -3.24770 2.73680 3.31958 3.45338 3.51882 3.57445 3.71158 4.57556 4.64897 5.16456 5.37889 5.46883 5.58862 5.68448 5.75644 5.77904 5.79370 5.87311 5.91415 6.02615 6.10409 6.21516 6.37336 6.47661 6.56061 6.58980 6.69027 7.10840 7.48749 7.60438 7.85237 7.89934 8.03200 8.52073 8.54202 9.17750 9.83143 10.33741 11.28845 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.009921 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.371531 B = 2821.725691 C = 3628.901841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.048 3.952 4 C 0.136 3.864 5 N -0.562 5.562 6 C -0.240 4.240 7 H 0.063 0.937 8 C 0.021 3.979 9 N -0.887 5.887 10 Si 0.900 3.100 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.195 3.805 15 C 0.102 3.898 16 C -0.275 4.275 17 C 0.040 3.960 18 N -0.325 5.325 19 N -0.371 5.371 20 C 0.109 3.891 21 H 0.074 0.926 22 H 0.026 0.974 23 H 0.029 0.971 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.110 0.890 27 H 0.038 0.962 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 6.824 -3.126 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.031 4.031 4 C 0.009 3.991 5 N -0.280 5.280 6 C -0.370 4.370 7 H 0.080 0.920 8 C -0.179 4.179 9 N -0.530 5.530 10 Si 0.730 3.270 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.202 1.202 14 C 0.066 3.934 15 C -0.029 4.029 16 C -0.305 4.305 17 C -0.145 4.145 18 N -0.147 5.147 19 N -0.154 5.154 20 C -0.033 4.033 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.127 0.873 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.187 0.813 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.877 7.629 -2.232 8.844 hybrid contribution -0.718 -1.417 -0.098 1.591 sum -4.595 6.212 -2.330 8.071 Atomic orbital electron populations 1.22640 0.84216 1.01546 0.98389 1.88236 1.16560 1.27460 1.94801 1.23371 0.98548 0.84315 0.96848 1.21195 0.87798 0.96715 0.93357 1.43931 1.73297 1.02720 1.08097 1.18867 1.39211 0.80848 0.98038 0.91982 1.24957 0.96568 0.97753 0.98633 1.69961 1.35986 1.36210 1.10862 0.86347 0.78466 0.85345 0.76828 1.21756 1.21773 1.20244 1.19829 0.84971 0.94632 0.93937 1.22660 0.98954 0.89004 0.92290 1.21046 0.91763 1.06295 1.11410 1.23578 0.98688 0.94776 0.97475 1.77111 0.94294 1.22948 1.20389 1.48182 1.04837 1.25091 1.37281 1.21679 0.97466 0.90508 0.93654 0.90693 0.95560 0.95245 0.95629 0.95468 0.87290 0.94410 0.93754 0.93517 0.91220 0.84636 0.81305 0.90985 0.90534 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.56 10.18 -35.23 -0.36 -7.91 16 3 C 0.05 0.93 6.28 37.16 0.23 1.16 16 4 C 0.14 3.00 5.70 -4.04 -0.02 2.98 16 5 N -0.56 -13.21 2.43 -174.61 -0.42 -13.64 16 6 C -0.24 -6.40 8.97 -15.06 -0.14 -6.54 16 7 H 0.06 1.67 7.93 -52.49 -0.42 1.25 16 8 C 0.02 0.57 4.94 -17.43 -0.09 0.49 16 9 N -0.89 -25.61 11.33 55.49 0.63 -24.99 16 10 Si 0.90 22.27 29.61 -169.99 -5.03 17.24 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.19 3.92 5.85 -5.19 -0.03 3.89 16 15 C 0.10 2.14 6.48 -82.26 -0.53 1.60 16 16 C -0.28 -5.73 10.72 -40.01 -0.43 -6.16 16 17 C 0.04 0.79 12.03 -17.36 -0.21 0.58 16 18 N -0.33 -6.87 12.58 30.63 0.39 -6.48 16 19 N -0.37 -7.51 4.01 -63.88 -0.26 -7.77 16 20 C 0.11 1.73 10.16 59.85 0.61 2.34 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.11 2.86 5.32 -51.93 -0.28 2.59 16 27 H 0.04 0.75 6.00 -51.93 -0.31 0.44 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 31 H 0.14 2.66 8.06 -52.49 -0.42 2.24 16 32 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 33 H 0.07 1.20 7.50 -51.93 -0.39 0.81 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.06 7.00 -51.92 -0.36 0.70 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -32.26 295.83 -5.16 -37.42 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.06 Total: -0.25 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.51 Total: 1.93 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.33 Total: -52.88 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.36 Total: -7.91 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.26 -5.16 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489836094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.370 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds