Wall clock time and date at job start Sun Mar 29 2020 22:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99661 * 2 1 4 4 C 1.53007 * 109.46760 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47355 * 64.99761 * 4 3 2 6 6 C 1.36939 * 120.00073 * 270.00079 * 5 4 3 7 7 H 1.07998 * 119.99923 * 146.31814 * 6 5 4 8 8 C 1.38816 * 119.99442 * 326.31879 * 6 5 4 9 9 N 1.31616 * 120.00315 * 336.42918 * 8 6 5 10 10 Si 1.86803 * 119.99510 * 156.43036 * 8 6 5 11 11 H 1.48495 * 109.47059 * 89.99884 * 10 8 6 12 12 H 1.48497 * 109.46937 * 209.99790 * 10 8 6 13 13 H 1.48498 * 109.47060 * 329.99503 * 10 8 6 14 14 C 1.46500 * 119.99928 * 89.99632 * 5 4 3 15 15 C 1.50699 * 109.47016 * 95.50823 * 14 5 4 16 16 C 1.35324 * 126.12380 * 95.01945 * 15 14 5 17 17 C 1.39875 * 107.91755 * 180.24075 * 16 15 14 18 18 N 1.30841 * 108.19974 * 359.56117 * 17 16 15 19 19 N 1.34945 * 126.12871 * 275.00163 * 15 14 5 20 20 C 1.46497 * 126.03828 * 359.97438 * 19 15 14 21 21 H 1.09003 * 109.46626 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46929 * 300.00063 * 1 2 3 23 23 H 1.09000 * 109.47175 * 60.00855 * 1 2 3 24 24 H 1.08996 * 109.47492 * 59.99647 * 3 2 1 25 25 H 1.08996 * 109.46923 * 299.99487 * 3 2 1 26 26 H 1.08999 * 109.46746 * 304.99512 * 4 3 2 27 27 H 1.09003 * 109.46501 * 184.99578 * 4 3 2 28 28 H 0.97000 * 119.99686 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.47123 * 335.50751 * 14 5 4 30 30 H 1.09000 * 109.46969 * 215.50498 * 14 5 4 31 31 H 1.07992 * 126.04536 * 359.97438 * 16 15 14 32 32 H 1.07998 * 125.89733 * 179.73398 * 17 16 15 33 33 H 1.08997 * 109.47184 * 89.99693 * 20 19 15 34 34 H 1.08999 * 109.47355 * 210.00652 * 20 19 15 35 35 H 1.09009 * 109.46855 * 330.00013 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0979 -0.7975 -1.3343 7 1 3.8834 -1.3027 -2.2645 8 6 4.4964 -1.5282 -0.2233 9 7 5.1873 -0.9463 0.7339 10 14 4.0519 -3.3375 -0.0870 11 1 5.1251 -4.1586 -0.7028 12 1 3.9072 -3.7051 1.3445 13 1 2.7702 -3.5870 -0.7942 14 6 4.2883 1.3997 -2.4130 15 6 5.7706 1.6682 -2.4557 16 6 6.6881 0.9679 -3.1622 17 6 7.9427 1.5380 -2.9221 18 7 7.7827 2.5501 -2.1085 19 7 6.4207 2.6500 -1.7967 20 6 5.8098 3.6454 -0.9122 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8507 0.5686 0.8428 27 1 3.9784 2.1766 0.0901 28 1 5.4661 -1.4571 1.5100 29 1 3.7500 2.3444 -2.3359 30 1 3.9863 0.8827 -3.3238 31 1 6.4878 0.1166 -3.7956 32 1 8.8808 1.2025 -3.3388 33 1 5.7948 3.2638 0.1087 34 1 6.3901 4.5674 -0.9471 35 1 4.7897 3.8456 -1.2403 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489836094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:01 Heat of formation + Delta-G solvation = 40.582660 kcal Electronic energy + Delta-G solvation = -17885.388683 eV Core-core repulsion = 15113.812788 eV Total energy + Delta-G solvation = -2771.575894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.84403 -38.79390 -37.07555 -34.10044 -33.36043 -31.86694 -29.92368 -27.49774 -27.31587 -26.94678 -24.74804 -22.47584 -21.79727 -20.40019 -18.66978 -17.61761 -17.11792 -16.64895 -16.52954 -16.13124 -15.61778 -15.38879 -15.02500 -14.86521 -14.51976 -14.03908 -13.51657 -13.38299 -13.16713 -12.97610 -12.71415 -12.67000 -12.45125 -12.28959 -11.93543 -11.91768 -11.50251 -11.39747 -10.45293 -10.29926 -10.00452 -9.20955 -8.58104 -7.76336 -5.28974 1.16381 1.47171 1.50854 1.60396 1.90502 2.12931 2.60370 3.24353 3.39664 3.76553 3.87153 4.13273 4.34390 4.40149 4.45335 4.49111 4.58110 4.62202 4.66804 4.76997 4.82260 4.88471 4.96356 4.96888 5.01443 5.10536 5.53871 5.74656 5.83260 5.97452 6.36973 6.47500 6.70438 6.98080 7.23067 7.90879 8.37277 9.21877 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.009921 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.371531 B = 2821.725691 C = 3628.901841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.134 3.866 5 N -0.573 5.573 6 C -0.232 4.232 7 H 0.055 0.945 8 C -0.025 4.025 9 N -0.916 5.916 10 Si 0.945 3.055 11 H -0.291 1.291 12 H -0.299 1.299 13 H -0.274 1.274 14 C 0.197 3.803 15 C 0.088 3.912 16 C -0.296 4.296 17 C 0.037 3.963 18 N -0.348 5.348 19 N -0.376 5.376 20 C 0.101 3.899 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.244 0.756 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.201 0.799 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 7.925 -3.807 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.024 4.024 4 C 0.008 3.992 5 N -0.292 5.292 6 C -0.363 4.363 7 H 0.073 0.927 8 C -0.221 4.221 9 N -0.562 5.562 10 Si 0.776 3.224 11 H -0.219 1.219 12 H -0.226 1.226 13 H -0.199 1.199 14 C 0.069 3.931 15 C -0.043 4.043 16 C -0.327 4.327 17 C -0.147 4.147 18 N -0.170 5.170 19 N -0.159 5.159 20 C -0.040 4.040 21 H 0.097 0.903 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.218 0.782 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.926 8.753 -2.923 10.460 hybrid contribution -0.433 -1.684 0.056 1.740 sum -5.359 7.069 -2.867 9.322 Atomic orbital electron populations 1.22812 0.81637 1.02507 1.00104 1.88156 1.19529 1.28790 1.95197 1.23222 0.96276 0.84096 0.98756 1.21142 0.90093 0.96610 0.91396 1.44011 1.73801 1.02153 1.09249 1.18983 1.37233 0.82708 0.97362 0.92738 1.25435 0.97467 1.00273 0.98962 1.70095 1.37934 1.36877 1.11268 0.85626 0.78153 0.82550 0.76119 1.21876 1.22555 1.19869 1.19907 0.84868 0.95598 0.92678 1.22802 0.99341 0.89512 0.92692 1.21345 0.92560 1.06732 1.12014 1.24110 0.99708 0.94087 0.96844 1.77059 0.95114 1.23770 1.21063 1.48523 1.04573 1.25515 1.37328 1.21970 0.99178 0.90400 0.92420 0.90265 0.93603 0.93607 0.93375 0.93582 0.91364 0.92471 0.94685 0.90307 0.90804 0.84270 0.78195 0.92144 0.88266 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.40 10.18 -148.98 -1.52 -17.91 16 3 C 0.05 1.99 6.28 71.98 0.45 2.44 16 4 C 0.13 5.75 5.70 86.38 0.49 6.24 16 5 N -0.57 -26.27 2.43 -706.33 -1.72 -27.99 16 6 C -0.23 -12.31 8.97 84.03 0.75 -11.56 16 7 H 0.05 2.92 7.93 -2.91 -0.02 2.90 16 8 C -0.02 -1.37 4.94 84.86 0.42 -0.96 16 9 N -0.92 -53.84 11.33 21.65 0.25 -53.59 16 10 Si 0.95 46.24 29.61 68.60 2.03 48.27 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 13 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 14 C 0.20 7.53 5.85 85.63 0.50 8.03 16 15 C 0.09 3.57 6.48 41.41 0.27 3.83 16 16 C -0.30 -12.06 10.72 21.99 0.24 -11.83 16 17 C 0.04 1.42 12.03 85.24 1.03 2.44 16 18 N -0.35 -14.22 12.58 -57.02 -0.72 -14.94 16 19 N -0.38 -14.63 4.01 -356.03 -1.43 -16.06 16 20 C 0.10 2.97 10.16 127.77 1.30 4.27 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 3.61 5.32 -2.39 -0.01 3.60 16 27 H 0.06 2.16 6.00 -2.39 -0.01 2.15 16 28 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.08 2.47 7.13 -2.39 -0.02 2.45 16 30 H 0.07 2.74 8.08 -2.39 -0.02 2.72 16 31 H 0.14 5.39 8.06 -2.91 -0.02 5.37 16 32 H 0.20 5.97 8.06 -2.91 -0.02 5.95 16 33 H 0.06 1.93 7.50 -2.39 -0.02 1.91 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 2.48 7.00 -2.38 -0.02 2.46 16 Total: -1.00 -69.01 295.83 4.66 -64.36 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.07 Total: 12.94 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.69 Total: 4.93 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.62 Total: -112.58 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.52 Total: -17.91 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -69.01 4.66 -64.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489836094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.938 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds