Wall clock time and date at job start Sun Mar 29 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36821 * 120.00258 * 2 1 4 4 H 1.08002 * 119.99810 * 149.56980 * 3 2 1 5 5 C 1.39068 * 120.00185 * 329.57490 * 3 2 1 6 6 N 1.31352 * 119.99920 * 351.04113 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 171.04025 * 5 3 2 8 8 H 1.48503 * 109.47296 * 60.00182 * 7 5 3 9 9 H 1.48503 * 109.46868 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47583 * 299.99924 * 7 5 3 11 11 C 1.34780 * 119.99915 * 180.02562 * 2 1 3 12 12 O 1.21663 * 120.00082 * 179.97438 * 11 2 1 13 13 C 1.46947 * 119.99932 * 0.02562 * 11 2 1 14 14 C 1.33123 * 120.00204 * 180.02562 * 13 11 2 15 15 C 1.50704 * 120.00131 * 180.02562 * 14 13 11 16 16 C 1.53175 * 109.54235 * 239.82107 * 15 14 13 17 17 C 1.53109 * 109.15874 * 183.23939 * 16 15 14 18 18 O 1.42899 * 109.48295 * 57.47158 * 17 16 15 19 19 C 1.42901 * 114.10166 * 298.89002 * 18 17 16 20 20 C 1.53090 * 109.41534 * 61.15937 * 19 18 17 21 21 H 1.08997 * 109.46734 * 95.39648 * 1 2 3 22 22 H 1.08995 * 109.46959 * 215.40137 * 1 2 3 23 23 H 1.09007 * 109.46639 * 335.40353 * 1 2 3 24 24 H 0.96997 * 119.99930 * 180.02562 * 6 5 3 25 25 H 1.08004 * 119.99993 * 359.97438 * 13 11 2 26 26 H 1.07995 * 119.99852 * 359.97438 * 14 13 11 27 27 H 1.09004 * 109.54454 * 359.97438 * 15 14 13 28 28 H 1.08996 * 109.52332 * 303.05955 * 16 15 14 29 29 H 1.09008 * 109.52468 * 63.24407 * 16 15 14 30 30 H 1.08994 * 109.40250 * 297.49312 * 17 16 15 31 31 H 1.08999 * 109.48274 * 177.50057 * 17 16 15 32 32 H 1.08991 * 109.47849 * 301.17446 * 19 18 17 33 33 H 1.08999 * 109.48050 * 181.13903 * 19 18 17 34 34 H 1.08996 * 109.52550 * 182.48506 * 20 19 18 35 35 H 1.09006 * 109.57256 * 62.32651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1176 1.2492 0.4737 5 6 1.5975 2.3064 -0.6099 6 7 0.5086 2.1907 -1.3352 7 14 2.4052 3.9773 -0.3976 8 1 3.7922 3.9274 -0.9259 9 1 1.6288 5.0006 -1.1428 10 1 2.4372 4.3322 1.0440 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0010 13 6 1.4041 -2.4398 -0.0017 14 6 2.0697 -3.5927 -0.0017 15 6 1.3161 -4.8978 -0.0034 16 6 1.6869 -5.7052 1.2443 17 6 0.9795 -7.0622 1.1933 18 8 1.3466 -7.7462 -0.0064 19 6 0.9805 -7.0596 -1.2050 20 6 1.6896 -5.7036 -1.2514 21 1 -0.3633 -0.0966 -1.0231 22 1 -0.3633 -0.8376 0.5953 23 1 -0.3633 0.9345 0.4278 24 1 0.1240 2.9728 -1.7609 25 1 0.3241 -2.4398 -0.0017 26 1 3.1496 -3.5928 -0.0012 27 1 0.2442 -4.7000 -0.0041 28 1 2.7656 -5.8590 1.2715 29 1 1.3729 -5.1625 2.1361 30 1 -0.0995 -6.9088 1.2087 31 1 1.2745 -7.6586 2.0567 32 1 -0.0984 -6.9063 -1.2210 33 1 1.2763 -7.6541 -2.0693 34 1 1.3776 -5.1597 -2.1430 35 1 2.7686 -5.8564 -1.2769 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491846446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:06 Heat of formation + Delta-G solvation = -70.799040 kcal Electronic energy + Delta-G solvation = -16881.948005 eV Core-core repulsion = 14073.249486 eV Total energy + Delta-G solvation = -2808.698518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45769 -38.33930 -35.26739 -34.48297 -31.73902 -31.15860 -30.81676 -26.50355 -25.50953 -24.16218 -23.56703 -21.25082 -19.96518 -18.15880 -16.92311 -16.53559 -16.06859 -15.75441 -14.93458 -14.66348 -14.54127 -13.97103 -13.83306 -13.72075 -12.86160 -12.46745 -12.35785 -11.87876 -11.65869 -11.38870 -11.37103 -11.23916 -10.93129 -10.92721 -10.73166 -10.40329 -10.34756 -10.32319 -9.60731 -9.02134 -8.71936 -8.40099 -7.59429 -6.35082 -3.92432 2.14293 3.21103 3.23473 3.27643 3.78740 4.12345 4.42316 4.63733 4.81635 4.82399 4.96496 5.10211 5.15624 5.20017 5.32066 5.39259 5.58326 5.60779 5.74098 5.81344 5.83728 5.95928 6.10784 6.12122 6.31685 6.38431 6.80672 7.02076 7.05102 7.09230 7.16275 7.52995 8.19279 8.51067 9.19305 9.40634 10.02801 10.70137 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.059201 B = 0.004442 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.852765 B = 6301.410978 C = 6407.035712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.437 5.437 3 C -0.305 4.305 4 H 0.095 0.905 5 C 0.033 3.967 6 N -0.879 5.879 7 Si 0.928 3.072 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.273 1.273 11 C 0.470 3.530 12 O -0.595 6.595 13 C -0.172 4.172 14 C -0.113 4.113 15 C -0.059 4.059 16 C -0.148 4.148 17 C 0.061 3.939 18 O -0.386 6.386 19 C 0.061 3.939 20 C -0.149 4.149 21 H 0.052 0.948 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.269 0.731 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -13.753 2.267 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.154 5.154 3 C -0.434 4.434 4 H 0.113 0.887 5 C -0.171 4.171 6 N -0.518 5.518 7 Si 0.755 3.245 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.260 3.740 12 O -0.481 6.481 13 C -0.193 4.193 14 C -0.133 4.133 15 C -0.077 4.077 16 C -0.186 4.186 17 C -0.015 4.015 18 O -0.305 6.305 19 C -0.015 4.015 20 C -0.186 4.186 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.725 -13.727 2.154 14.386 hybrid contribution -0.065 1.323 -0.073 1.326 sum -3.790 -12.405 2.082 13.137 Atomic orbital electron populations 1.21493 0.81494 0.99866 1.00463 1.43443 1.05404 1.04849 1.61703 1.19567 1.04185 0.85617 1.34008 0.88702 1.25459 0.96583 1.00403 0.94695 1.69917 1.20881 1.30853 1.30107 0.85971 0.79298 0.80753 0.78524 1.19672 1.20875 1.19812 1.18297 0.87540 0.84021 0.84133 1.90599 1.13746 1.87331 1.56456 1.22985 0.99635 0.93823 1.02897 1.23298 1.00366 0.92177 0.97496 1.20322 0.99518 0.93158 0.94715 1.22213 1.02093 0.95892 0.98365 1.22590 0.98169 0.93217 0.87563 1.87906 1.82055 1.46649 1.13924 1.22594 0.98187 0.93194 0.87556 1.22214 1.02077 0.95905 0.98430 0.92916 0.95353 0.91093 0.92076 0.86876 0.86127 0.90774 0.90711 0.90560 0.93275 0.88958 0.93238 0.88937 0.90507 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 8.27 59.85 0.50 3.00 16 2 N -0.44 -11.62 2.98 -123.60 -0.37 -11.98 16 3 C -0.31 -8.73 9.10 -15.02 -0.14 -8.86 16 4 H 0.10 2.81 7.55 -52.49 -0.40 2.42 16 5 C 0.03 0.87 5.10 -17.45 -0.09 0.79 16 6 N -0.88 -23.77 11.03 55.50 0.61 -23.16 16 7 Si 0.93 20.92 29.56 -169.99 -5.03 15.90 16 8 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 C 0.47 12.09 7.57 -12.73 -0.10 11.99 16 12 O -0.59 -17.35 16.00 5.22 0.08 -17.27 16 13 C -0.17 -3.40 8.82 -37.84 -0.33 -3.73 16 14 C -0.11 -1.92 8.36 -36.09 -0.30 -2.23 16 15 C -0.06 -0.76 2.57 -91.59 -0.24 -0.99 16 16 C -0.15 -1.69 5.41 -26.58 -0.14 -1.84 16 17 C 0.06 0.62 6.84 37.21 0.25 0.88 16 18 O -0.39 -4.61 10.77 -35.23 -0.38 -4.99 16 19 C 0.06 0.63 6.84 37.20 0.25 0.89 16 20 C -0.15 -1.74 5.41 -26.59 -0.14 -1.89 16 21 H 0.05 1.22 7.80 -51.93 -0.40 0.81 16 22 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 23 H 0.07 1.67 7.05 -51.93 -0.37 1.31 16 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.11 1.95 6.15 -52.48 -0.32 1.63 16 26 H 0.12 2.28 7.49 -52.49 -0.39 1.89 16 27 H 0.07 0.90 7.82 -51.93 -0.41 0.50 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -32.05 289.68 -6.33 -38.38 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.14 Total: 0.76 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.48 Total: -2.00 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.24 Total: -35.15 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.30 Total: -22.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.05 -6.33 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491846446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.418 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds