Wall clock time and date at job start Sun Mar 29 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36821 * 120.00258 * 2 1 4 4 H 1.08002 * 119.99810 * 149.56980 * 3 2 1 5 5 C 1.39068 * 120.00185 * 329.57490 * 3 2 1 6 6 N 1.31352 * 119.99920 * 351.04113 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 171.04025 * 5 3 2 8 8 H 1.48503 * 109.47296 * 60.00182 * 7 5 3 9 9 H 1.48503 * 109.46868 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47583 * 299.99924 * 7 5 3 11 11 C 1.34780 * 119.99915 * 180.02562 * 2 1 3 12 12 O 1.21663 * 120.00082 * 179.97438 * 11 2 1 13 13 C 1.46947 * 119.99932 * 0.02562 * 11 2 1 14 14 C 1.33123 * 120.00204 * 180.02562 * 13 11 2 15 15 C 1.50704 * 120.00131 * 180.02562 * 14 13 11 16 16 C 1.53175 * 109.54235 * 239.82107 * 15 14 13 17 17 C 1.53109 * 109.15874 * 183.23939 * 16 15 14 18 18 O 1.42899 * 109.48295 * 57.47158 * 17 16 15 19 19 C 1.42901 * 114.10166 * 298.89002 * 18 17 16 20 20 C 1.53090 * 109.41534 * 61.15937 * 19 18 17 21 21 H 1.08997 * 109.46734 * 95.39648 * 1 2 3 22 22 H 1.08995 * 109.46959 * 215.40137 * 1 2 3 23 23 H 1.09007 * 109.46639 * 335.40353 * 1 2 3 24 24 H 0.96997 * 119.99930 * 180.02562 * 6 5 3 25 25 H 1.08004 * 119.99993 * 359.97438 * 13 11 2 26 26 H 1.07995 * 119.99852 * 359.97438 * 14 13 11 27 27 H 1.09004 * 109.54454 * 359.97438 * 15 14 13 28 28 H 1.08996 * 109.52332 * 303.05955 * 16 15 14 29 29 H 1.09008 * 109.52468 * 63.24407 * 16 15 14 30 30 H 1.08994 * 109.40250 * 297.49312 * 17 16 15 31 31 H 1.08999 * 109.48274 * 177.50057 * 17 16 15 32 32 H 1.08991 * 109.47849 * 301.17446 * 19 18 17 33 33 H 1.08999 * 109.48050 * 181.13903 * 19 18 17 34 34 H 1.08996 * 109.52550 * 182.48506 * 20 19 18 35 35 H 1.09006 * 109.57256 * 62.32651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1176 1.2492 0.4737 5 6 1.5975 2.3064 -0.6099 6 7 0.5086 2.1907 -1.3352 7 14 2.4052 3.9773 -0.3976 8 1 3.7922 3.9274 -0.9259 9 1 1.6288 5.0006 -1.1428 10 1 2.4372 4.3322 1.0440 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0010 13 6 1.4041 -2.4398 -0.0017 14 6 2.0697 -3.5927 -0.0017 15 6 1.3161 -4.8978 -0.0034 16 6 1.6869 -5.7052 1.2443 17 6 0.9795 -7.0622 1.1933 18 8 1.3466 -7.7462 -0.0064 19 6 0.9805 -7.0596 -1.2050 20 6 1.6896 -5.7036 -1.2514 21 1 -0.3633 -0.0966 -1.0231 22 1 -0.3633 -0.8376 0.5953 23 1 -0.3633 0.9345 0.4278 24 1 0.1240 2.9728 -1.7609 25 1 0.3241 -2.4398 -0.0017 26 1 3.1496 -3.5928 -0.0012 27 1 0.2442 -4.7000 -0.0041 28 1 2.7656 -5.8590 1.2715 29 1 1.3729 -5.1625 2.1361 30 1 -0.0995 -6.9088 1.2087 31 1 1.2745 -7.6586 2.0567 32 1 -0.0984 -6.9063 -1.2210 33 1 1.2763 -7.6541 -2.0693 34 1 1.3776 -5.1597 -2.1430 35 1 2.7686 -5.8564 -1.2769 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491846446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:06 Heat of formation + Delta-G solvation = -91.764840 kcal Electronic energy + Delta-G solvation = -16882.857150 eV Core-core repulsion = 14073.249486 eV Total energy + Delta-G solvation = -2809.607664 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57138 -40.08537 -36.86403 -36.10190 -33.75215 -32.23638 -31.99294 -28.38639 -27.08334 -25.72706 -24.42124 -22.73187 -21.04387 -19.83896 -18.93739 -18.13509 -17.06439 -16.88167 -16.61131 -16.17590 -15.80044 -15.61581 -15.25510 -14.78070 -14.61294 -13.81286 -13.61859 -13.38814 -13.26719 -13.13909 -12.96462 -12.70584 -12.39004 -12.24916 -12.14924 -11.95761 -11.87095 -11.22336 -11.03749 -10.57997 -10.34552 -10.22777 -9.64150 -8.39420 -6.07442 0.56885 1.38647 1.42283 1.49913 2.25388 2.50832 3.00106 3.07620 3.14072 3.71754 3.82701 3.93263 4.11213 4.15204 4.32140 4.36610 4.45511 4.58262 4.66476 4.78216 4.80792 4.83918 4.93566 4.96997 5.11353 5.19304 5.27088 5.30330 5.37932 5.57260 5.58793 6.11585 6.30909 6.48680 7.12544 7.40683 8.01002 8.64225 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.059201 B = 0.004442 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.852765 B = 6301.410978 C = 6407.035712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.454 5.454 3 C -0.349 4.349 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.992 3.008 8 H -0.278 1.278 9 H -0.266 1.266 10 H -0.264 1.264 11 C 0.457 3.543 12 O -0.645 6.645 13 C -0.197 4.197 14 C -0.074 4.074 15 C -0.057 4.057 16 C -0.147 4.147 17 C 0.062 3.938 18 O -0.404 6.404 19 C 0.063 3.937 20 C -0.148 4.148 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.276 0.724 25 H 0.145 0.855 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -14.860 2.376 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.171 5.171 3 C -0.478 4.478 4 H 0.085 0.915 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.815 3.185 8 H -0.203 1.203 9 H -0.191 1.191 10 H -0.188 1.188 11 C 0.249 3.751 12 O -0.536 6.536 13 C -0.217 4.217 14 C -0.095 4.095 15 C -0.075 4.075 16 C -0.184 4.184 17 C -0.014 4.014 18 O -0.323 6.323 19 C -0.013 4.013 20 C -0.186 4.186 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.163 0.837 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.389 -14.846 2.264 15.955 hybrid contribution 0.490 1.555 -0.120 1.634 sum -4.899 -13.291 2.144 14.326 Atomic orbital electron populations 1.21477 0.79346 1.00862 1.00628 1.43711 1.06868 1.04652 1.61844 1.19552 1.04313 0.87633 1.36280 0.91462 1.26225 0.96988 1.03319 0.93689 1.69980 1.21306 1.32085 1.29765 0.85025 0.77989 0.76469 0.79018 1.20338 1.19065 1.18845 1.19280 0.87407 0.85782 0.82619 1.90546 1.16114 1.88352 1.58574 1.22767 1.00748 0.91336 1.06879 1.23573 0.99531 0.93725 0.92652 1.20415 0.99926 0.90902 0.96251 1.22211 1.01736 0.96818 0.97679 1.22696 0.98917 0.92198 0.87609 1.87897 1.82433 1.47249 1.14736 1.22678 0.98888 0.92092 0.87675 1.22214 1.01720 0.96921 0.97753 0.93659 0.91154 0.92543 0.91427 0.83734 0.88533 0.88798 0.91833 0.89897 0.91603 0.87394 0.91595 0.87502 0.90267 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.38 8.27 127.77 1.06 6.43 16 2 N -0.45 -24.68 2.98 -663.19 -1.98 -26.66 16 3 C -0.35 -20.66 9.10 84.11 0.77 -19.90 16 4 H 0.07 4.23 7.55 -2.91 -0.02 4.21 16 5 C 0.00 0.02 5.10 84.96 0.43 0.45 16 6 N -0.89 -48.28 11.03 21.68 0.24 -48.04 16 7 Si 0.99 43.09 29.56 68.60 2.03 45.12 16 8 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 C 0.46 24.11 7.57 86.52 0.66 24.76 16 12 O -0.65 -39.43 16.00 -4.23 -0.07 -39.50 16 13 C -0.20 -7.60 8.82 23.40 0.21 -7.40 16 14 C -0.07 -2.46 8.36 24.54 0.21 -2.26 16 15 C -0.06 -1.32 2.57 -11.42 -0.03 -1.35 16 16 C -0.15 -3.01 5.41 30.69 0.17 -2.84 16 17 C 0.06 1.05 6.84 72.02 0.49 1.55 16 18 O -0.40 -8.44 10.77 -148.98 -1.60 -10.04 16 19 C 0.06 1.10 6.84 72.01 0.49 1.59 16 20 C -0.15 -3.16 5.41 30.68 0.17 -2.99 16 21 H 0.04 2.07 7.80 -2.39 -0.02 2.05 16 22 H 0.07 2.51 6.42 -2.39 -0.02 2.49 16 23 H 0.06 2.66 7.05 -2.38 -0.02 2.64 16 24 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.15 4.60 6.15 -2.91 -0.02 4.59 16 26 H 0.10 3.72 7.49 -2.91 -0.02 3.70 16 27 H 0.09 1.91 7.82 -2.39 -0.02 1.89 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -71.65 289.68 4.29 -67.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.06 Total: 13.71 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.61 Total: -1.94 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.74 Total: -74.70 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.67 Total: -49.54 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -71.65 4.29 -67.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491846446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.411 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds