Wall clock time and date at job start Sun Mar 29 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46498 * 2 1 4 4 C 1.34845 * 116.99491 * 180.02562 * 3 2 1 5 5 C 1.34415 * 119.99695 * 179.72933 * 4 3 2 6 6 C 1.41801 * 119.99972 * 0.26721 * 5 4 3 7 7 O 1.21741 * 120.00092 * 354.53205 * 6 5 4 8 8 N 1.34775 * 119.99516 * 174.52146 * 6 5 4 9 9 C 1.46507 * 119.99599 * 184.69640 * 8 6 5 10 10 C 1.53005 * 109.46784 * 185.19568 * 9 8 6 11 11 C 1.50696 * 115.55022 * 57.90738 * 10 9 8 12 12 H 1.07997 * 119.99993 * 264.62667 * 11 10 9 13 13 C 1.37878 * 120.00027 * 84.63634 * 11 10 9 14 14 N 1.31520 * 120.00097 * 1.95266 * 13 11 10 15 15 Si 1.86801 * 120.00289 * 181.95640 * 13 11 10 16 16 H 1.48495 * 109.47164 * 89.99497 * 15 13 11 17 17 H 1.48495 * 109.47061 * 209.99757 * 15 13 11 18 18 H 1.48504 * 109.46845 * 329.99561 * 15 13 11 19 19 C 1.52997 * 117.49776 * 272.23592 * 10 9 8 20 20 C 1.52997 * 117.49598 * 203.57816 * 10 9 8 21 21 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46938 * 299.99692 * 1 2 3 23 23 H 1.08999 * 109.47413 * 59.99682 * 1 2 3 24 24 H 1.08998 * 109.46938 * 240.00307 * 2 1 3 25 25 H 1.08993 * 109.47116 * 120.00009 * 2 1 3 26 26 H 1.07994 * 119.99989 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.99810 * 180.27625 * 5 4 3 28 28 H 0.96998 * 120.00160 * 4.70164 * 8 6 5 29 29 H 1.09003 * 109.47013 * 305.19045 * 9 8 6 30 30 H 1.08997 * 109.47056 * 65.19287 * 9 8 6 31 31 H 0.96995 * 120.00430 * 185.02406 * 14 13 11 32 32 H 1.09004 * 117.49957 * 0.02562 * 19 10 9 33 33 H 1.09002 * 117.50135 * 145.01936 * 19 10 9 34 34 H 1.09003 * 117.50185 * 214.97921 * 20 10 9 35 35 H 1.08998 * 117.50038 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8644 2.7878 -0.0061 6 6 3.0005 3.9123 -0.0056 7 8 1.7970 3.7554 -0.1007 8 7 3.5119 5.1548 0.1003 9 6 2.6158 6.3092 0.2044 10 6 3.4400 7.5981 0.1820 11 6 4.3090 7.7928 -1.0338 12 1 5.3479 7.4992 -1.0075 13 6 3.7776 8.3460 -2.1795 14 7 2.5227 8.7392 -2.1991 15 14 4.8401 8.5371 -3.7040 16 1 4.7297 7.3152 -4.5406 17 1 4.3798 9.7141 -4.4837 18 1 6.2553 8.7340 -3.2995 19 6 3.9678 8.1225 1.5189 20 6 2.8180 8.8454 0.8128 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.0086 0.6893 -0.0014 27 1 4.9350 2.9294 -0.0110 28 1 4.4731 5.2847 0.1075 29 1 1.9216 6.3072 -0.6359 30 1 2.0564 6.2518 1.1381 31 1 2.1280 9.0605 -3.0247 32 1 3.7281 7.5491 2.4144 33 1 4.9433 8.6088 1.5191 34 1 3.0375 9.8070 0.3488 35 1 1.8214 8.7480 1.2435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493164596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:51 Heat of formation + Delta-G solvation = -39.152196 kcal Electronic energy + Delta-G solvation = -16844.478241 eV Core-core repulsion = 14037.152032 eV Total energy + Delta-G solvation = -2807.326208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37975 -38.10424 -36.49091 -32.94464 -32.56835 -31.88421 -30.36119 -26.36054 -25.19554 -23.15824 -22.28134 -21.04511 -19.43760 -19.03150 -17.63630 -16.24470 -15.88200 -15.33230 -15.29121 -14.60997 -14.16194 -13.90124 -13.35472 -13.04211 -12.82339 -12.62949 -12.30566 -12.20203 -11.71192 -11.45036 -11.36422 -11.03605 -10.92015 -10.82592 -10.47308 -10.16374 -9.47288 -8.98350 -8.91640 -8.42890 -8.38344 -8.11934 -7.74476 -6.00216 -4.08685 1.81038 3.30303 3.31433 3.38470 3.39524 4.20844 4.28469 4.42737 4.72687 4.83045 5.01111 5.10714 5.29067 5.42929 5.46304 5.74218 5.87171 6.00674 6.10979 6.22057 6.38518 6.44101 6.60937 6.67450 6.79182 7.04722 7.20044 7.48266 7.51137 7.55210 7.67687 7.88492 8.42697 8.64845 8.92245 9.28245 9.57934 11.08183 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.005643 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.039896 B = 4961.023355 C = 5362.754847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.283 6.283 4 C 0.115 3.885 5 C -0.289 4.289 6 C 0.539 3.461 7 O -0.553 6.553 8 N -0.706 5.706 9 C 0.166 3.834 10 C 0.026 3.974 11 C -0.495 4.495 12 H 0.059 0.941 13 C 0.073 3.927 14 N -0.875 5.875 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.212 4.212 20 C -0.146 4.146 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -15.005 4.617 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.193 6.193 4 C 0.047 3.953 5 C -0.312 4.312 6 C 0.329 3.671 7 O -0.434 6.434 8 N -0.355 5.355 9 C 0.043 3.957 10 C 0.025 3.975 11 C -0.533 4.533 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.512 5.512 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.250 4.250 20 C -0.184 4.184 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.156 0.844 28 H 0.231 0.769 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.509 -14.803 4.461 15.469 hybrid contribution 1.232 0.019 -0.945 1.553 sum 1.741 -14.784 3.515 15.295 Atomic orbital electron populations 1.21716 0.92878 1.02118 1.04161 1.23276 0.96680 0.81970 1.00848 1.86760 1.19569 1.27355 1.85634 1.22989 0.83987 0.97073 0.91281 1.21535 1.00282 0.91987 1.17377 1.16967 0.88452 0.83649 0.78054 1.90796 1.15540 1.86387 1.50718 1.45834 1.10580 1.05890 1.73201 1.20838 0.91760 0.84166 0.98977 1.19066 0.97437 0.90278 0.90716 1.20331 0.95721 1.41388 0.95871 0.92287 1.24975 0.95149 0.94288 0.98642 1.69994 1.12446 1.41994 1.26732 0.86649 0.80715 0.77655 0.83343 1.20660 1.21274 1.19865 1.23034 0.98403 1.06816 0.96706 1.22457 0.94197 0.98573 1.03162 0.90856 0.91381 0.91259 0.92133 0.92204 0.85535 0.84388 0.76919 0.91368 0.95104 0.92963 0.91734 0.90493 0.89703 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 2 C 0.05 0.48 6.85 37.16 0.25 0.73 16 3 O -0.28 -4.39 7.95 -39.47 -0.31 -4.71 16 4 C 0.11 1.54 10.43 29.38 0.31 1.84 16 5 C -0.29 -4.56 9.82 -39.57 -0.39 -4.95 16 6 C 0.54 11.36 7.55 -14.90 -0.11 11.25 16 7 O -0.55 -13.72 14.83 -18.05 -0.27 -13.99 16 8 N -0.71 -15.08 5.36 -63.17 -0.34 -15.42 16 9 C 0.17 4.03 5.56 -4.04 -0.02 4.01 16 10 C 0.03 0.63 1.51 -155.66 -0.23 0.40 16 11 C -0.50 -13.20 8.38 -34.44 -0.29 -13.48 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 2.01 5.43 -17.82 -0.10 1.91 16 14 N -0.88 -25.18 12.73 55.43 0.71 -24.47 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.21 -4.61 9.94 -26.70 -0.27 -4.88 16 20 C -0.15 -3.48 9.26 -26.70 -0.25 -3.73 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.13 1.05 8.01 -52.49 -0.42 0.63 16 27 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.40 7.71 8.20 -40.82 -0.33 7.38 16 29 H 0.07 1.90 8.10 -51.93 -0.42 1.48 16 30 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 35 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 306.64 15.07 4.62 4.62 Total: -1.00 -33.07 306.64 -6.70 -39.77 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.37 Total: 6.04 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.71 Total: -7.99 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.37 Total: -39.89 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.58 Total: -18.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.07 -6.70 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493164596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.617 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds