Wall clock time and date at job start Sun Mar 29 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46498 * 2 1 4 4 C 1.34845 * 116.99491 * 180.02562 * 3 2 1 5 5 C 1.34415 * 119.99695 * 179.72933 * 4 3 2 6 6 C 1.41801 * 119.99972 * 0.26721 * 5 4 3 7 7 O 1.21741 * 120.00092 * 354.53205 * 6 5 4 8 8 N 1.34775 * 119.99516 * 174.52146 * 6 5 4 9 9 C 1.46507 * 119.99599 * 184.69640 * 8 6 5 10 10 C 1.53005 * 109.46784 * 185.19568 * 9 8 6 11 11 C 1.50696 * 115.55022 * 57.90738 * 10 9 8 12 12 H 1.07997 * 119.99993 * 264.62667 * 11 10 9 13 13 C 1.37878 * 120.00027 * 84.63634 * 11 10 9 14 14 N 1.31520 * 120.00097 * 1.95266 * 13 11 10 15 15 Si 1.86801 * 120.00289 * 181.95640 * 13 11 10 16 16 H 1.48495 * 109.47164 * 89.99497 * 15 13 11 17 17 H 1.48495 * 109.47061 * 209.99757 * 15 13 11 18 18 H 1.48504 * 109.46845 * 329.99561 * 15 13 11 19 19 C 1.52997 * 117.49776 * 272.23592 * 10 9 8 20 20 C 1.52997 * 117.49598 * 203.57816 * 10 9 8 21 21 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46938 * 299.99692 * 1 2 3 23 23 H 1.08999 * 109.47413 * 59.99682 * 1 2 3 24 24 H 1.08998 * 109.46938 * 240.00307 * 2 1 3 25 25 H 1.08993 * 109.47116 * 120.00009 * 2 1 3 26 26 H 1.07994 * 119.99989 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.99810 * 180.27625 * 5 4 3 28 28 H 0.96998 * 120.00160 * 4.70164 * 8 6 5 29 29 H 1.09003 * 109.47013 * 305.19045 * 9 8 6 30 30 H 1.08997 * 109.47056 * 65.19287 * 9 8 6 31 31 H 0.96995 * 120.00430 * 185.02406 * 14 13 11 32 32 H 1.09004 * 117.49957 * 0.02562 * 19 10 9 33 33 H 1.09002 * 117.50135 * 145.01936 * 19 10 9 34 34 H 1.09003 * 117.50185 * 214.97921 * 20 10 9 35 35 H 1.08998 * 117.50038 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8644 2.7878 -0.0061 6 6 3.0005 3.9123 -0.0056 7 8 1.7970 3.7554 -0.1007 8 7 3.5119 5.1548 0.1003 9 6 2.6158 6.3092 0.2044 10 6 3.4400 7.5981 0.1820 11 6 4.3090 7.7928 -1.0338 12 1 5.3479 7.4992 -1.0075 13 6 3.7776 8.3460 -2.1795 14 7 2.5227 8.7392 -2.1991 15 14 4.8401 8.5371 -3.7040 16 1 4.7297 7.3152 -4.5406 17 1 4.3798 9.7141 -4.4837 18 1 6.2553 8.7340 -3.2995 19 6 3.9678 8.1225 1.5189 20 6 2.8180 8.8454 0.8128 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.0086 0.6893 -0.0014 27 1 4.9350 2.9294 -0.0110 28 1 4.4731 5.2847 0.1075 29 1 1.9216 6.3072 -0.6359 30 1 2.0564 6.2518 1.1381 31 1 2.1280 9.0605 -3.0247 32 1 3.7281 7.5491 2.4144 33 1 4.9433 8.6088 1.5191 34 1 3.0375 9.8070 0.3488 35 1 1.8214 8.7480 1.2435 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493164596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:51 Heat of formation + Delta-G solvation = -61.005545 kcal Electronic energy + Delta-G solvation = -16845.425873 eV Core-core repulsion = 14037.152032 eV Total energy + Delta-G solvation = -2808.273841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77913 -39.45779 -38.32170 -34.71465 -33.95240 -33.55994 -31.41233 -28.17811 -27.18197 -23.98446 -23.64817 -22.88568 -21.28409 -20.55375 -18.93131 -18.06517 -16.89992 -16.78489 -16.76999 -16.50220 -15.89675 -15.52403 -14.83991 -14.60617 -14.09866 -13.93331 -13.58323 -13.46660 -13.35322 -13.11371 -12.88789 -12.82045 -12.34316 -12.25251 -12.02025 -11.84420 -11.39969 -10.93804 -10.64871 -10.40263 -10.02228 -9.79048 -9.31157 -8.08891 -6.22212 0.64827 1.42614 1.43566 1.52643 2.40997 2.43147 2.70134 2.75660 3.20399 3.53477 3.85491 4.12123 4.19457 4.27932 4.41991 4.56266 4.63858 4.71465 4.73553 4.77287 4.95837 4.96602 5.00965 5.13506 5.25777 5.28573 5.33778 5.59490 5.64696 5.77617 5.87611 6.38176 6.54444 6.85262 7.05405 7.47226 7.68575 8.99478 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.005643 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.039896 B = 4961.023355 C = 5362.754847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 O -0.328 6.328 4 C 0.149 3.851 5 C -0.333 4.333 6 C 0.531 3.469 7 O -0.605 6.605 8 N -0.705 5.705 9 C 0.183 3.817 10 C 0.001 3.999 11 C -0.499 4.499 12 H 0.065 0.935 13 C 0.020 3.980 14 N -0.911 5.911 15 Si 0.952 3.048 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.260 1.260 19 C -0.176 4.176 20 C -0.157 4.157 21 H 0.107 0.893 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.171 0.829 28 H 0.407 0.593 29 H 0.018 0.982 30 H 0.030 0.970 31 H 0.257 0.743 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -17.350 5.107 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.034 4.034 3 O -0.239 6.239 4 C 0.081 3.919 5 C -0.355 4.355 6 C 0.324 3.676 7 O -0.490 6.490 8 N -0.355 5.355 9 C 0.058 3.942 10 C 0.000 4.000 11 C -0.537 4.537 12 H 0.083 0.917 13 C -0.180 4.180 14 N -0.549 5.549 15 Si 0.778 3.222 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.184 1.184 19 C -0.213 4.213 20 C -0.195 4.195 21 H 0.126 0.874 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.206 0.794 27 H 0.189 0.811 28 H 0.243 0.757 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.700 -17.160 4.964 18.066 hybrid contribution 0.472 0.604 -1.056 1.305 sum 3.172 -16.556 3.908 17.304 Atomic orbital electron populations 1.21791 0.93414 1.03736 1.02192 1.23642 0.96409 0.79810 1.03547 1.86723 1.21303 1.31173 1.84709 1.23783 0.83908 0.98143 0.86077 1.21592 1.01123 0.90797 1.21951 1.17883 0.88592 0.84587 0.76516 1.90762 1.17923 1.86997 1.53319 1.45761 1.10621 1.05449 1.73680 1.20408 0.91515 0.85560 0.96732 1.19110 0.98346 0.90463 0.92036 1.20659 0.96117 1.40320 0.96579 0.91713 1.25755 0.96177 0.94362 1.01666 1.70135 1.14177 1.43447 1.27179 0.85653 0.79710 0.77145 0.79742 1.20806 1.21534 1.18350 1.23019 0.97759 1.04714 0.95789 1.22380 0.95500 0.97489 1.04166 0.87402 0.93109 0.93493 0.89577 0.89149 0.79383 0.81142 0.75739 0.96314 0.95207 0.93376 0.89337 0.89480 0.91737 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.04 0.68 6.85 71.98 0.49 1.17 16 3 O -0.33 -9.65 7.95 -58.93 -0.47 -10.12 16 4 C 0.15 3.50 10.43 66.95 0.70 4.20 16 5 C -0.33 -9.85 9.82 22.28 0.22 -9.63 16 6 C 0.53 22.60 7.55 85.12 0.64 23.24 16 7 O -0.60 -31.13 14.83 17.71 0.26 -30.87 16 8 N -0.71 -30.43 5.36 -471.96 -2.53 -32.96 16 9 C 0.18 9.16 5.56 86.38 0.48 9.64 16 10 C 0.00 0.06 1.51 -52.93 -0.08 -0.02 16 11 C -0.50 -26.60 8.38 25.60 0.21 -26.38 16 12 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 13 C 0.02 1.13 5.43 84.65 0.46 1.59 16 14 N -0.91 -54.04 12.73 21.45 0.27 -53.76 16 15 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 19 C -0.18 -7.37 9.94 30.62 0.30 -7.07 16 20 C -0.16 -7.58 9.26 30.62 0.28 -7.30 16 21 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.19 1.97 8.01 -2.91 -0.02 1.94 16 27 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.41 15.58 8.20 -92.71 -0.76 14.82 16 29 H 0.02 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 31 H 0.26 14.71 8.32 -92.71 -0.77 13.94 16 32 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.06 3.34 8.14 -2.39 -0.02 3.33 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -75.54 306.64 4.32 -71.22 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.31 Total: 23.36 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.46 Total: -12.64 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.26 Total: -86.72 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.21 Total: -40.99 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.54 4.32 -71.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493164596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.214 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds