Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45207 * 109.46902 * 2 1 4 4 C 1.34835 * 116.99773 * 180.02562 * 3 2 1 5 5 C 1.34414 * 119.99766 * 180.02562 * 4 3 2 6 6 C 1.41798 * 119.99694 * 179.97438 * 5 4 3 7 7 O 1.21740 * 119.99926 * 5.11591 * 6 5 4 8 8 N 1.34778 * 119.99691 * 184.83223 * 6 5 4 9 9 C 1.46503 * 119.99688 * 175.10561 * 8 6 5 10 10 C 1.53004 * 109.46703 * 184.76789 * 9 8 6 11 11 C 1.50705 * 115.54828 * 64.88345 * 10 9 8 12 12 H 1.07995 * 119.99703 * 266.66678 * 11 10 9 13 13 C 1.37878 * 120.00042 * 86.67042 * 11 10 9 14 14 N 1.31511 * 119.99737 * 178.67429 * 13 11 10 15 15 Si 1.86803 * 119.99964 * 358.67104 * 13 11 10 16 16 H 1.48497 * 109.47002 * 91.30123 * 15 13 11 17 17 H 1.48504 * 109.47018 * 211.30396 * 15 13 11 18 18 H 1.48503 * 109.47127 * 331.30094 * 15 13 11 19 19 C 1.52992 * 117.49926 * 279.21034 * 10 9 8 20 20 C 1.52999 * 117.49564 * 210.55109 * 10 9 8 21 21 H 1.08998 * 109.46991 * 300.00063 * 1 2 3 22 22 H 1.08995 * 109.46954 * 60.00143 * 1 2 3 23 23 H 1.09004 * 109.46647 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46991 * 239.99937 * 2 1 3 25 25 H 1.09005 * 109.47423 * 120.00141 * 2 1 3 26 26 H 1.08003 * 120.00124 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.99609 * 359.97438 * 5 4 3 28 28 H 0.97001 * 120.00180 * 355.11517 * 8 6 5 29 29 H 1.09001 * 109.47085 * 304.76593 * 9 8 6 30 30 H 1.08992 * 109.46890 * 64.76895 * 9 8 6 31 31 H 0.97005 * 119.99354 * 179.97438 * 14 13 11 32 32 H 1.08998 * 117.49959 * 0.02562 * 19 10 9 33 33 H 1.08999 * 117.50044 * 145.02308 * 19 10 9 34 34 H 1.09003 * 117.49722 * 214.98522 * 20 10 9 35 35 H 1.09000 * 117.50201 * 359.97435 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8644 2.7878 0.0000 6 6 5.2702 2.9736 -0.0001 7 8 6.0112 2.0123 -0.0945 8 7 5.7858 4.2149 0.0988 9 6 7.2352 4.3995 0.2068 10 6 7.5456 5.8818 0.4244 11 6 7.0433 6.4679 1.7188 12 1 6.0803 6.9555 1.7530 13 6 7.8133 6.3815 2.8593 14 7 7.3866 6.9158 3.9827 15 14 9.4625 5.5057 2.8087 16 1 10.5334 6.4846 2.4923 17 1 9.7340 4.8848 4.1301 18 1 9.4311 4.4512 1.7635 19 6 7.5526 6.7902 -0.8067 20 6 8.8706 6.4141 -0.1251 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.0087 0.6892 -0.0005 27 1 3.2064 3.6442 0.0004 28 1 5.1974 4.9860 0.0985 29 1 7.6132 3.8215 1.0501 30 1 7.7142 4.0589 -0.7111 31 1 7.9283 6.8547 4.7851 32 1 7.3357 6.3319 -1.7715 33 1 7.1944 7.8119 -0.6804 34 1 9.3789 7.1885 0.4495 35 1 9.5213 5.7083 -0.6412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493164597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -39.675837 kcal Electronic energy + Delta-G solvation = -16560.787979 eV Core-core repulsion = 13753.439064 eV Total energy + Delta-G solvation = -2807.348915 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49573 -38.67930 -37.00102 -33.30546 -32.80026 -32.09272 -30.62366 -26.79596 -25.27488 -23.48520 -22.32104 -21.64009 -19.57101 -18.95283 -17.77559 -16.69573 -16.12838 -15.81144 -15.57202 -15.00225 -14.36945 -14.18814 -13.74189 -13.22203 -13.09250 -12.78558 -12.66813 -12.41312 -12.20436 -11.98124 -11.38871 -11.26344 -11.12341 -10.72569 -10.48853 -10.14713 -9.68948 -9.42058 -9.14298 -8.64819 -8.59277 -8.54161 -8.09448 -6.12405 -4.16544 1.64719 2.91938 3.31140 3.41138 3.47191 3.89300 4.17943 4.43198 4.62646 4.63733 4.89653 4.95710 4.97771 5.16611 5.28152 5.48804 5.70470 5.72614 5.80650 5.96548 6.05749 6.11481 6.28731 6.30444 6.45623 6.59876 6.74378 7.04261 7.11845 7.20658 7.28546 7.71600 8.30168 8.44962 8.88119 8.90216 9.50878 10.99062 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.004940 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.592149 B = 5666.130821 C = 5913.771683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.323 6.323 4 C 0.127 3.873 5 C -0.285 4.285 6 C 0.559 3.441 7 O -0.581 6.581 8 N -0.698 5.698 9 C 0.157 3.843 10 C -0.016 4.016 11 C -0.489 4.489 12 H 0.078 0.922 13 C 0.080 3.920 14 N -0.896 5.896 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.256 1.256 19 C -0.179 4.179 20 C -0.193 4.193 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.404 0.596 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 -10.720 -8.526 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.235 6.235 4 C 0.059 3.941 5 C -0.307 4.307 6 C 0.349 3.651 7 O -0.465 6.465 8 N -0.346 5.346 9 C 0.033 3.967 10 C -0.017 4.017 11 C -0.526 4.526 12 H 0.096 0.904 13 C -0.123 4.123 14 N -0.533 5.533 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.180 1.180 19 C -0.216 4.216 20 C -0.231 4.231 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.153 0.847 27 H 0.147 0.853 28 H 0.239 0.761 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.179 -11.196 -8.363 16.720 hybrid contribution 0.774 -0.130 0.214 0.814 sum -8.405 -11.326 -8.150 16.289 Atomic orbital electron populations 1.21777 0.92742 1.02839 1.03731 1.23306 0.96190 0.80785 1.01903 1.86248 1.20700 1.29668 1.86916 1.22916 0.82796 0.98380 0.89962 1.20967 0.95572 0.97144 1.17012 1.16623 0.87898 0.83464 0.77084 1.90748 1.62322 1.40351 1.53061 1.45698 1.09115 1.07456 1.72326 1.21131 0.79368 0.96816 0.99383 1.19635 0.97155 0.90132 0.94807 1.20197 1.05588 1.36988 0.89821 0.90381 1.24961 0.97961 0.94299 0.95106 1.69891 1.38457 1.44400 1.00556 0.86867 0.84303 0.80850 0.77390 1.20422 1.22040 1.18038 1.22836 1.01710 1.00980 0.96057 1.22951 0.91200 1.03951 1.05018 0.91343 0.91431 0.90339 0.91557 0.91483 0.84671 0.85260 0.76137 0.91687 0.93988 0.92531 0.90864 0.89413 0.89184 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.05 0.43 6.85 37.16 0.25 0.68 16 3 O -0.32 -3.91 10.17 -16.24 -0.17 -4.08 16 4 C 0.13 1.74 9.91 29.38 0.29 2.03 16 5 C -0.28 -4.52 9.72 -39.57 -0.38 -4.91 16 6 C 0.56 10.88 7.55 -14.90 -0.11 10.77 16 7 O -0.58 -12.92 16.12 5.15 0.08 -12.83 16 8 N -0.70 -13.85 5.44 -63.17 -0.34 -14.20 16 9 C 0.16 3.44 5.12 -4.04 -0.02 3.42 16 10 C -0.02 -0.36 0.81 -155.66 -0.13 -0.49 16 11 C -0.49 -13.12 9.29 -34.44 -0.32 -13.44 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 13 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 14 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 15 Si 0.88 21.76 24.89 -169.99 -4.23 17.53 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.26 -6.12 5.73 56.52 0.32 -5.80 16 19 C -0.18 -3.50 9.96 -26.70 -0.27 -3.76 16 20 C -0.19 -4.04 7.61 -26.70 -0.20 -4.25 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.14 1.78 7.40 -52.48 -0.39 1.39 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.40 7.42 8.41 -40.82 -0.34 7.08 16 29 H 0.06 1.58 6.63 -51.93 -0.34 1.24 16 30 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.09 1.97 7.29 -51.93 -0.38 1.59 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -32.00 300.47 -5.27 -37.27 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.31 Total: 6.31 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.60 Total: -8.39 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.43 Total: -40.34 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.08 Total: -16.91 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.00 -5.27 -37.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493164597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.406 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds