Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45207 * 109.46902 * 2 1 4 4 C 1.34835 * 116.99773 * 180.02562 * 3 2 1 5 5 C 1.34414 * 119.99766 * 180.02562 * 4 3 2 6 6 C 1.41798 * 119.99694 * 179.97438 * 5 4 3 7 7 O 1.21740 * 119.99926 * 5.11591 * 6 5 4 8 8 N 1.34778 * 119.99691 * 184.83223 * 6 5 4 9 9 C 1.46503 * 119.99688 * 175.10561 * 8 6 5 10 10 C 1.53004 * 109.46703 * 184.76789 * 9 8 6 11 11 C 1.50705 * 115.54828 * 64.88345 * 10 9 8 12 12 H 1.07995 * 119.99703 * 266.66678 * 11 10 9 13 13 C 1.37878 * 120.00042 * 86.67042 * 11 10 9 14 14 N 1.31511 * 119.99737 * 178.67429 * 13 11 10 15 15 Si 1.86803 * 119.99964 * 358.67104 * 13 11 10 16 16 H 1.48497 * 109.47002 * 91.30123 * 15 13 11 17 17 H 1.48504 * 109.47018 * 211.30396 * 15 13 11 18 18 H 1.48503 * 109.47127 * 331.30094 * 15 13 11 19 19 C 1.52992 * 117.49926 * 279.21034 * 10 9 8 20 20 C 1.52999 * 117.49564 * 210.55109 * 10 9 8 21 21 H 1.08998 * 109.46991 * 300.00063 * 1 2 3 22 22 H 1.08995 * 109.46954 * 60.00143 * 1 2 3 23 23 H 1.09004 * 109.46647 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46991 * 239.99937 * 2 1 3 25 25 H 1.09005 * 109.47423 * 120.00141 * 2 1 3 26 26 H 1.08003 * 120.00124 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.99609 * 359.97438 * 5 4 3 28 28 H 0.97001 * 120.00180 * 355.11517 * 8 6 5 29 29 H 1.09001 * 109.47085 * 304.76593 * 9 8 6 30 30 H 1.08992 * 109.46890 * 64.76895 * 9 8 6 31 31 H 0.97005 * 119.99354 * 179.97438 * 14 13 11 32 32 H 1.08998 * 117.49959 * 0.02562 * 19 10 9 33 33 H 1.08999 * 117.50044 * 145.02308 * 19 10 9 34 34 H 1.09003 * 117.49722 * 214.98522 * 20 10 9 35 35 H 1.09000 * 117.50201 * 359.97435 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3507 1.5457 -0.0005 5 6 3.8644 2.7878 0.0000 6 6 5.2702 2.9736 -0.0001 7 8 6.0112 2.0123 -0.0945 8 7 5.7858 4.2149 0.0988 9 6 7.2352 4.3995 0.2068 10 6 7.5456 5.8818 0.4244 11 6 7.0433 6.4679 1.7188 12 1 6.0803 6.9555 1.7530 13 6 7.8133 6.3815 2.8593 14 7 7.3866 6.9158 3.9827 15 14 9.4625 5.5057 2.8087 16 1 10.5334 6.4846 2.4923 17 1 9.7340 4.8848 4.1301 18 1 9.4311 4.4512 1.7635 19 6 7.5526 6.7902 -0.8067 20 6 8.8706 6.4141 -0.1251 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.0087 0.6892 -0.0005 27 1 3.2064 3.6442 0.0004 28 1 5.1974 4.9860 0.0985 29 1 7.6132 3.8215 1.0501 30 1 7.7142 4.0589 -0.7111 31 1 7.9283 6.8547 4.7851 32 1 7.3357 6.3319 -1.7715 33 1 7.1944 7.8119 -0.6804 34 1 9.3789 7.1885 0.4495 35 1 9.5213 5.7083 -0.6412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493164597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -62.475354 kcal Electronic energy + Delta-G solvation = -16561.776640 eV Core-core repulsion = 13753.439064 eV Total energy + Delta-G solvation = -2808.337576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88490 -39.82048 -38.69307 -34.92822 -34.20676 -33.70077 -31.58320 -28.50470 -27.19999 -24.28221 -23.55591 -23.21069 -21.21819 -20.58473 -18.87826 -18.48436 -17.32255 -16.99185 -16.92306 -16.81316 -15.94328 -15.61696 -15.16646 -14.79427 -14.56289 -14.21428 -13.94851 -13.67828 -13.37667 -13.09360 -13.03322 -12.62584 -12.27046 -12.17993 -11.97182 -11.91494 -11.59017 -11.07487 -10.96715 -10.64793 -10.33063 -10.01047 -9.50056 -8.29321 -6.35537 0.42199 1.34130 1.39702 1.50816 1.93432 2.37248 2.47560 2.72423 3.06319 3.32654 3.74023 4.05063 4.08126 4.14426 4.36701 4.38187 4.42717 4.43451 4.55061 4.67983 4.85639 4.87987 4.94228 4.96093 5.10445 5.18595 5.27001 5.32758 5.50020 5.64972 5.71155 6.24772 6.29362 6.71704 6.79923 7.34584 7.39647 8.85630 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.004940 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.592149 B = 5666.130821 C = 5913.771683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.331 6.331 4 C 0.164 3.836 5 C -0.320 4.320 6 C 0.559 3.441 7 O -0.614 6.614 8 N -0.701 5.701 9 C 0.166 3.834 10 C -0.041 4.041 11 C -0.479 4.479 12 H 0.043 0.957 13 C 0.025 3.975 14 N -0.946 5.946 15 Si 0.930 3.070 16 H -0.265 1.265 17 H -0.302 1.302 18 H -0.241 1.241 19 C -0.152 4.152 20 C -0.191 4.191 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.409 0.591 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.264 0.736 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 -12.207 -10.345 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.243 6.243 4 C 0.095 3.905 5 C -0.342 4.342 6 C 0.352 3.648 7 O -0.501 6.501 8 N -0.350 5.350 9 C 0.041 3.959 10 C -0.042 4.042 11 C -0.516 4.516 12 H 0.061 0.939 13 C -0.173 4.173 14 N -0.585 5.585 15 Si 0.756 3.244 16 H -0.190 1.190 17 H -0.229 1.229 18 H -0.164 1.164 19 C -0.189 4.189 20 C -0.228 4.228 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.122 0.878 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.245 0.755 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.384 -12.677 -10.212 18.790 hybrid contribution 0.626 0.253 0.749 1.009 sum -8.758 -12.425 -9.463 17.906 Atomic orbital electron populations 1.21826 0.91383 1.04368 1.03316 1.23730 0.97294 0.78775 1.03464 1.86252 1.19617 1.32744 1.85702 1.22965 0.83624 0.97827 0.86071 1.20758 0.93836 0.98607 1.21010 1.17041 0.89084 0.82693 0.75973 1.90716 1.63378 1.41099 1.54936 1.45688 1.08490 1.08071 1.72722 1.20881 0.80629 0.95562 0.98799 1.19457 0.99540 0.90921 0.94322 1.20372 1.03980 1.35456 0.91818 0.93866 1.25721 1.01443 0.95280 0.94851 1.70024 1.40157 1.46949 1.01417 0.86021 0.80739 0.80392 0.77297 1.18997 1.22906 1.16448 1.22871 1.00009 1.00224 0.95835 1.23022 0.91237 1.03859 1.04730 0.91992 0.91637 0.87820 0.89762 0.90234 0.83901 0.84278 0.75533 0.94579 0.92540 0.92677 0.87848 0.89605 0.90280 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.04 0.55 6.85 71.98 0.49 1.04 16 3 O -0.33 -7.33 10.17 -81.02 -0.82 -8.15 16 4 C 0.16 4.23 9.91 66.95 0.66 4.90 16 5 C -0.32 -9.90 9.72 22.28 0.22 -9.69 16 6 C 0.56 21.52 7.55 85.12 0.64 22.16 16 7 O -0.61 -27.02 16.12 -4.48 -0.07 -27.10 16 8 N -0.70 -27.55 5.44 -471.98 -2.57 -30.12 16 9 C 0.17 7.09 5.12 86.38 0.44 7.53 16 10 C -0.04 -1.81 0.81 -52.93 -0.04 -1.86 16 11 C -0.48 -26.07 9.29 25.60 0.24 -25.83 16 12 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 13 C 0.02 1.43 5.47 84.66 0.46 1.89 16 14 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 15 Si 0.93 44.88 24.89 68.60 1.71 46.59 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 18 H -0.24 -10.97 5.73 99.48 0.57 -10.40 16 19 C -0.15 -5.56 9.96 30.62 0.30 -5.26 16 20 C -0.19 -7.47 7.61 30.62 0.23 -7.23 16 21 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.14 3.48 7.40 -2.91 -0.02 3.46 16 27 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 28 H 0.41 15.00 8.41 -92.71 -0.78 14.22 16 29 H 0.04 1.74 6.63 -2.39 -0.02 1.72 16 30 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 31 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 32 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 3.28 7.29 -2.39 -0.02 3.26 16 35 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -69.73 300.47 3.09 -66.64 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.16 Total: 23.52 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.39 Total: -13.15 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -2.27 Total: -88.36 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.90 Total: -35.24 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.71 Total: 46.59 kcal Total: -69.73 3.09 -66.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493164597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.160 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds