Wall clock time and date at job start Sun Mar 29 2020 22:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00062 * 2 1 4 4 C 1.52991 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47483 * 64.99691 * 4 3 2 6 6 C 1.36820 * 120.00205 * 96.63854 * 5 4 3 7 7 H 1.07998 * 120.00162 * 238.51271 * 6 5 4 8 8 C 1.39074 * 119.99667 * 58.78316 * 6 5 4 9 9 N 1.31344 * 119.99911 * 191.49190 * 8 6 5 10 10 Si 1.86801 * 120.00133 * 11.49513 * 8 6 5 11 11 H 1.48502 * 109.47009 * 53.98966 * 10 8 6 12 12 H 1.48496 * 109.47042 * 173.98573 * 10 8 6 13 13 H 1.48496 * 109.47068 * 293.98661 * 10 8 6 14 14 C 1.34775 * 119.99945 * 276.64380 * 5 4 3 15 15 O 1.21660 * 120.00060 * 5.10151 * 14 5 4 16 16 C 1.46955 * 120.00046 * 185.10286 * 14 5 4 17 17 C 1.33123 * 119.99850 * 187.07925 * 16 14 5 18 18 C 1.50701 * 120.00125 * 353.48917 * 17 16 14 19 19 C 1.53002 * 117.49712 * 174.61228 * 18 17 16 20 20 C 1.52997 * 117.49636 * 105.94990 * 18 17 16 21 21 H 1.08995 * 109.46991 * 60.00416 * 1 2 3 22 22 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47672 * 300.00312 * 1 2 3 24 24 H 1.09004 * 109.47621 * 59.99769 * 3 2 1 25 25 H 1.09001 * 109.46953 * 299.99976 * 3 2 1 26 26 H 1.09007 * 109.47597 * 304.99594 * 4 3 2 27 27 H 1.09004 * 109.47849 * 184.99876 * 4 3 2 28 28 H 0.97000 * 120.00255 * 180.02562 * 9 8 6 29 29 H 1.08002 * 119.99942 * 7.07766 * 16 14 5 30 30 H 1.08003 * 119.99518 * 173.48944 * 17 16 14 31 31 H 1.08993 * 115.54716 * 320.27726 * 18 17 16 32 32 H 1.09004 * 117.49806 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49984 * 145.02402 * 19 18 17 34 34 H 1.09005 * 117.49815 * 214.97308 * 20 18 17 35 35 H 1.08994 * 117.50122 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3974 1.3463 -2.2914 7 1 3.9000 1.2857 -3.2481 8 6 5.4693 2.2155 -2.1187 9 7 5.7323 3.1231 -3.0309 10 14 6.5349 2.0921 -0.5894 11 1 7.0357 0.7014 -0.4460 12 1 7.6858 3.0224 -0.7117 13 1 5.7304 2.4542 0.6050 14 6 3.9681 -0.7779 -1.3771 15 8 3.5077 -1.4696 -0.4885 16 6 4.5150 -1.4054 -2.5882 17 6 4.3804 -2.7163 -2.7774 18 6 3.7997 -3.5793 -1.6870 19 6 3.5536 -5.0546 -2.0094 20 6 2.3708 -4.0918 -1.8774 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8508 0.5685 0.8428 27 1 3.9785 2.1765 0.0902 28 1 6.4801 3.7291 -2.9107 29 1 5.0261 -0.8031 -3.3248 30 1 4.6875 -3.1612 -3.7124 31 1 4.1147 -3.3314 -0.6734 32 1 3.8113 -5.4008 -3.0103 33 1 3.7061 -5.7771 -1.2077 34 1 1.7457 -4.1816 -0.9889 35 1 1.8506 -3.8045 -2.7911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493707151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:58 Heat of formation + Delta-G solvation = -23.949937 kcal Electronic energy + Delta-G solvation = -17764.139569 eV Core-core repulsion = 14957.472580 eV Total energy + Delta-G solvation = -2806.666989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.93118 -37.26271 -36.51810 -34.62485 -32.05471 -31.55463 -29.23896 -25.85988 -24.80440 -23.46052 -21.95304 -21.69319 -20.01886 -18.57555 -16.68628 -16.14295 -15.81677 -15.47233 -14.93208 -14.51808 -14.38006 -14.12928 -13.48542 -13.05965 -12.77532 -12.36382 -11.96484 -11.95307 -11.67708 -11.18577 -11.14654 -10.97920 -10.89209 -10.49128 -10.30504 -10.28359 -10.07042 -9.79207 -9.03115 -9.01436 -8.40410 -8.15491 -7.38554 -6.42700 -4.25359 2.27751 3.10812 3.22565 3.30063 4.15031 4.32849 4.44411 4.56500 4.63368 4.97565 5.21921 5.44211 5.59652 5.61536 5.70353 5.82949 5.92462 5.95382 5.98036 6.01227 6.03684 6.13977 6.28739 6.37290 6.48354 6.51516 6.65796 6.93382 7.15055 7.32656 7.57493 7.83183 8.25043 8.34359 9.07097 9.43946 9.87172 10.66820 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.010101 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.141955 B = 2771.377616 C = 3680.445670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.051 3.949 4 C 0.106 3.894 5 N -0.471 5.471 6 C -0.340 4.340 7 H 0.093 0.907 8 C 0.072 3.928 9 N -0.869 5.869 10 Si 0.877 3.123 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.520 3.480 15 O -0.558 6.558 16 C -0.158 4.158 17 C -0.096 4.096 18 C -0.099 4.099 19 C -0.200 4.200 20 C -0.160 4.160 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.275 0.725 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -6.560 3.031 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.027 4.027 4 C -0.018 4.018 5 N -0.194 5.194 6 C -0.468 4.468 7 H 0.111 0.889 8 C -0.136 4.136 9 N -0.504 5.504 10 Si 0.703 3.297 11 H -0.190 1.190 12 H -0.214 1.214 13 H -0.191 1.191 14 C 0.312 3.688 15 O -0.441 6.441 16 C -0.178 4.178 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.237 4.237 20 C -0.197 4.197 21 H 0.050 0.950 22 H 0.095 0.905 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.658 -6.866 3.416 8.973 hybrid contribution 0.384 0.630 0.463 0.871 sum -4.273 -6.237 3.880 8.498 Atomic orbital electron populations 1.22624 0.83460 1.01690 0.98742 1.88241 1.17285 1.26854 1.95027 1.22969 0.95528 0.85071 0.99157 1.21789 0.91622 0.98815 0.89545 1.43404 1.58933 1.04074 1.12942 1.18901 1.14566 1.20531 0.92809 0.88933 1.25687 0.96121 0.94801 0.96963 1.69663 1.28839 1.16885 1.35015 0.86968 0.80427 0.79037 0.83238 1.19006 1.21378 1.19124 1.18740 0.80320 0.82630 0.87149 1.90619 1.48211 1.62123 1.43157 1.22919 1.00991 0.94967 0.98968 1.22859 0.97917 0.93941 0.96916 1.21439 0.98287 0.91614 1.00368 1.23063 1.05019 0.93779 1.01882 1.22691 0.91247 1.03291 1.02444 0.94988 0.90502 0.95270 0.94336 0.93061 0.91624 0.89532 0.91499 0.84957 0.87009 0.84982 0.89618 0.89470 0.89257 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.36 8.53 -55.48 -0.47 -7.84 16 3 C 0.05 1.00 6.28 37.15 0.23 1.23 16 4 C 0.11 2.33 4.39 -4.05 -0.02 2.32 16 5 N -0.47 -11.40 1.77 -116.21 -0.21 -11.61 16 6 C -0.34 -8.82 8.10 -15.02 -0.12 -8.95 16 7 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 8 C 0.07 1.88 5.34 -17.45 -0.09 1.78 16 9 N -0.87 -23.77 13.95 55.50 0.77 -23.00 16 10 Si 0.88 20.34 26.37 -169.99 -4.48 15.86 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.27 -5.83 5.96 56.52 0.34 -5.49 16 14 C 0.52 12.40 7.19 -12.73 -0.09 12.30 16 15 O -0.56 -13.65 11.24 -15.02 -0.17 -13.81 16 16 C -0.16 -3.36 9.31 -37.83 -0.35 -3.71 16 17 C -0.10 -1.76 9.75 -36.09 -0.35 -2.11 16 18 C -0.10 -1.78 4.29 -91.77 -0.39 -2.17 16 19 C -0.20 -2.87 10.24 -26.69 -0.27 -3.15 16 20 C -0.16 -2.58 10.24 -26.69 -0.27 -2.85 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 27 H 0.09 1.88 5.23 -51.93 -0.27 1.61 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.13 2.83 7.14 -52.49 -0.37 2.46 16 30 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.13 2.70 6.27 -51.93 -0.33 2.37 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -28.76 292.23 -6.00 -34.75 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.22 Total: 4.91 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.62 Total: -3.67 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.57 Total: -34.61 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.64 Total: -21.65 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.48 Total: 15.86 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.76 -6.00 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493707151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.804 kcal (2) G-P(sol) polarization free energy of solvation -28.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds