Wall clock time and date at job start Sun Mar 29 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00062 * 2 1 4 4 C 1.52991 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47483 * 64.99691 * 4 3 2 6 6 C 1.36820 * 120.00205 * 96.63854 * 5 4 3 7 7 H 1.07998 * 120.00162 * 238.51271 * 6 5 4 8 8 C 1.39074 * 119.99667 * 58.78316 * 6 5 4 9 9 N 1.31344 * 119.99911 * 191.49190 * 8 6 5 10 10 Si 1.86801 * 120.00133 * 11.49513 * 8 6 5 11 11 H 1.48502 * 109.47009 * 53.98966 * 10 8 6 12 12 H 1.48496 * 109.47042 * 173.98573 * 10 8 6 13 13 H 1.48496 * 109.47068 * 293.98661 * 10 8 6 14 14 C 1.34775 * 119.99945 * 276.64380 * 5 4 3 15 15 O 1.21660 * 120.00060 * 5.10151 * 14 5 4 16 16 C 1.46955 * 120.00046 * 185.10286 * 14 5 4 17 17 C 1.33123 * 119.99850 * 187.07925 * 16 14 5 18 18 C 1.50701 * 120.00125 * 353.48917 * 17 16 14 19 19 C 1.53002 * 117.49712 * 174.61228 * 18 17 16 20 20 C 1.52997 * 117.49636 * 105.94990 * 18 17 16 21 21 H 1.08995 * 109.46991 * 60.00416 * 1 2 3 22 22 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47672 * 300.00312 * 1 2 3 24 24 H 1.09004 * 109.47621 * 59.99769 * 3 2 1 25 25 H 1.09001 * 109.46953 * 299.99976 * 3 2 1 26 26 H 1.09007 * 109.47597 * 304.99594 * 4 3 2 27 27 H 1.09004 * 109.47849 * 184.99876 * 4 3 2 28 28 H 0.97000 * 120.00255 * 180.02562 * 9 8 6 29 29 H 1.08002 * 119.99942 * 7.07766 * 16 14 5 30 30 H 1.08003 * 119.99518 * 173.48944 * 17 16 14 31 31 H 1.08993 * 115.54716 * 320.27726 * 18 17 16 32 32 H 1.09004 * 117.49806 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49984 * 145.02402 * 19 18 17 34 34 H 1.09005 * 117.49815 * 214.97308 * 20 18 17 35 35 H 1.08994 * 117.50122 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.3974 1.3463 -2.2914 7 1 3.9000 1.2857 -3.2481 8 6 5.4693 2.2155 -2.1187 9 7 5.7323 3.1231 -3.0309 10 14 6.5349 2.0921 -0.5894 11 1 7.0357 0.7014 -0.4460 12 1 7.6858 3.0224 -0.7117 13 1 5.7304 2.4542 0.6050 14 6 3.9681 -0.7779 -1.3771 15 8 3.5077 -1.4696 -0.4885 16 6 4.5150 -1.4054 -2.5882 17 6 4.3804 -2.7163 -2.7774 18 6 3.7997 -3.5793 -1.6870 19 6 3.5536 -5.0546 -2.0094 20 6 2.3708 -4.0918 -1.8774 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8508 0.5685 0.8428 27 1 3.9785 2.1765 0.0902 28 1 6.4801 3.7291 -2.9107 29 1 5.0261 -0.8031 -3.3248 30 1 4.6875 -3.1612 -3.7124 31 1 4.1147 -3.3314 -0.6734 32 1 3.8113 -5.4008 -3.0103 33 1 3.7061 -5.7771 -1.2077 34 1 1.7457 -4.1816 -0.9889 35 1 1.8506 -3.8045 -2.7911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493707151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:57 Heat of formation + Delta-G solvation = -40.091848 kcal Electronic energy + Delta-G solvation = -17764.839535 eV Core-core repulsion = 14957.472580 eV Total energy + Delta-G solvation = -2807.366955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68959 -38.73791 -37.97121 -36.45065 -33.99855 -33.15468 -30.87092 -27.21631 -26.75793 -25.05175 -23.34819 -23.05211 -21.63495 -20.40214 -18.45861 -17.85572 -17.48198 -17.05846 -16.42970 -16.05668 -15.97708 -15.67251 -15.20733 -14.74490 -14.39733 -14.08821 -13.64072 -13.53828 -13.30128 -12.83868 -12.68218 -12.42507 -12.31376 -12.16111 -12.02234 -11.84728 -11.68861 -11.19691 -10.93860 -10.48735 -10.07068 -9.78455 -9.27323 -8.44937 -6.30196 0.68385 1.25956 1.34850 1.42938 2.22200 2.62401 2.79878 3.00007 3.09151 3.20074 3.87890 4.18106 4.22018 4.23669 4.29120 4.36590 4.48024 4.54082 4.56504 4.63524 4.69510 4.82651 4.82952 4.86513 4.96796 5.06557 5.33392 5.45532 5.55550 5.65368 5.82017 6.20100 6.35595 6.45135 7.05553 7.53911 7.99021 8.67878 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.010101 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.141955 B = 2771.377616 C = 3680.445670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.389 6.389 3 C 0.057 3.943 4 C 0.100 3.900 5 N -0.482 5.482 6 C -0.332 4.332 7 H 0.061 0.939 8 C 0.038 3.962 9 N -0.905 5.905 10 Si 0.925 3.075 11 H -0.278 1.278 12 H -0.280 1.280 13 H -0.245 1.245 14 C 0.513 3.487 15 O -0.569 6.569 16 C -0.204 4.204 17 C -0.055 4.055 18 C -0.136 4.136 19 C -0.162 4.162 20 C -0.162 4.162 21 H 0.036 0.964 22 H 0.087 0.913 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.279 0.721 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -8.096 3.686 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.308 6.308 3 C -0.021 4.021 4 C -0.023 4.023 5 N -0.205 5.205 6 C -0.460 4.460 7 H 0.078 0.922 8 C -0.167 4.167 9 N -0.542 5.542 10 Si 0.749 3.251 11 H -0.203 1.203 12 H -0.206 1.206 13 H -0.169 1.169 14 C 0.306 3.694 15 O -0.453 6.453 16 C -0.225 4.225 17 C -0.075 4.075 18 C -0.154 4.154 19 C -0.199 4.199 20 C -0.199 4.199 21 H 0.054 0.946 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.092 -8.401 4.082 10.638 hybrid contribution 0.416 0.951 0.235 1.064 sum -4.676 -7.449 4.317 9.798 Atomic orbital electron populations 1.22819 0.81052 1.02890 1.00117 1.88179 1.20017 1.27303 1.95303 1.22856 0.93882 0.85175 1.00182 1.21869 0.93596 0.98465 0.88361 1.43489 1.59640 1.04267 1.13152 1.18591 1.14451 1.20571 0.92416 0.92165 1.26160 0.96791 0.94389 0.99314 1.69735 1.29741 1.17926 1.36765 0.86204 0.79364 0.78260 0.81260 1.20337 1.20566 1.16885 1.19158 0.79932 0.82536 0.87785 1.90606 1.48776 1.62180 1.43713 1.22778 1.04500 0.96323 0.98893 1.23281 0.93773 0.92734 0.97725 1.21332 1.00316 0.94791 0.98917 1.23172 1.01502 0.91472 1.03731 1.22741 0.90715 1.03874 1.02615 0.94585 0.89474 0.92811 0.90964 0.94183 0.91990 0.89474 0.91098 0.86078 0.83403 0.87862 0.87148 0.87808 0.89515 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -15.81 8.53 -129.62 -1.11 -16.91 16 3 C 0.06 2.19 6.28 71.98 0.45 2.64 16 4 C 0.10 4.40 4.39 86.38 0.38 4.78 16 5 N -0.48 -23.76 1.77 -639.80 -1.13 -24.89 16 6 C -0.33 -17.75 8.10 84.12 0.68 -17.07 16 7 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 8 C 0.04 2.02 5.34 84.97 0.45 2.47 16 9 N -0.91 -50.42 13.95 21.68 0.30 -50.12 16 10 Si 0.92 41.90 26.37 68.60 1.81 43.71 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.24 -10.16 5.96 99.48 0.59 -9.57 16 14 C 0.51 24.88 7.19 86.53 0.62 25.51 16 15 O -0.57 -28.09 11.24 15.14 0.17 -27.92 16 16 C -0.20 -8.80 9.31 23.41 0.22 -8.58 16 17 C -0.06 -1.94 9.75 24.54 0.24 -1.70 16 18 C -0.14 -4.63 4.29 -11.54 -0.05 -4.68 16 19 C -0.16 -4.03 10.24 30.62 0.31 -3.71 16 20 C -0.16 -4.87 10.24 30.62 0.31 -4.56 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.73 7.71 -2.38 -0.02 2.72 16 27 H 0.09 3.73 5.23 -2.38 -0.01 3.72 16 28 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.12 5.39 7.14 -2.91 -0.02 5.37 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.10 4.20 6.27 -2.39 -0.01 4.18 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.85 292.23 5.86 -56.99 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.95 Total: 21.97 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.87 Total: -2.83 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -0.83 Total: -75.01 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.94 Total: -44.83 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.81 Total: 43.71 kcal Total: -62.85 5.86 -56.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493707151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.895 kcal (2) G-P(sol) polarization free energy of solvation -62.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds