Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00270 * 2 1 4 4 C 1.53003 * 109.46874 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47398 * 65.00186 * 4 3 2 6 6 C 1.36821 * 120.00317 * 87.90378 * 5 4 3 7 7 H 1.08001 * 120.00439 * 218.76657 * 6 5 4 8 8 C 1.39073 * 119.99336 * 38.49612 * 6 5 4 9 9 N 1.31354 * 120.00616 * 20.38539 * 8 6 5 10 10 Si 1.86801 * 119.99596 * 200.39360 * 8 6 5 11 11 H 1.48501 * 109.47512 * 89.99656 * 10 8 6 12 12 H 1.48508 * 109.47044 * 210.00058 * 10 8 6 13 13 H 1.48499 * 109.47037 * 329.99300 * 10 8 6 14 14 C 1.34776 * 120.00022 * 267.91117 * 5 4 3 15 15 O 1.21659 * 120.00137 * 359.97438 * 14 5 4 16 16 C 1.46950 * 120.00151 * 179.97438 * 14 5 4 17 17 C 1.33127 * 119.99963 * 179.97438 * 16 14 5 18 18 C 1.50703 * 119.99620 * 180.02562 * 17 16 14 19 19 C 1.53003 * 117.49556 * 188.62340 * 18 17 16 20 20 C 1.52999 * 60.00072 * 252.50950 * 19 18 17 21 21 H 1.08996 * 109.47418 * 300.00545 * 1 2 3 22 22 H 1.09008 * 109.46904 * 60.00324 * 1 2 3 23 23 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47010 * 60.00035 * 3 2 1 25 25 H 1.08994 * 109.46942 * 299.99693 * 3 2 1 26 26 H 1.09001 * 109.47323 * 304.99687 * 4 3 2 27 27 H 1.09001 * 109.46539 * 185.00369 * 4 3 2 28 28 H 0.96998 * 119.99752 * 180.02562 * 9 8 6 29 29 H 1.07998 * 120.00269 * 359.97438 * 16 14 5 30 30 H 1.07996 * 120.00336 * 359.97438 * 17 16 14 31 31 H 1.09001 * 115.55289 * 334.32653 * 18 17 16 32 32 H 1.09004 * 117.49763 * 0.02562 * 19 18 17 33 33 H 1.09000 * 117.49971 * 145.01984 * 19 18 17 34 34 H 1.08998 * 117.50218 * 252.51461 * 20 19 18 35 35 H 1.09000 * 117.51837 * 107.47605 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2266 1.3408 -2.3489 7 1 3.9440 0.9937 -3.3318 8 6 4.8396 2.5801 -2.1988 9 7 5.5307 2.8440 -1.1134 10 14 4.6797 3.8697 -3.5407 11 1 3.4819 4.7084 -3.2813 12 1 5.8920 4.7274 -3.5499 13 1 4.5383 3.1986 -4.8579 14 6 4.1364 -0.7726 -1.3206 15 8 3.9145 -1.4635 -0.3441 16 6 4.5784 -1.3953 -2.5761 17 6 4.7366 -2.7154 -2.6448 18 6 5.1905 -3.3538 -3.9322 19 6 5.1602 -4.8814 -4.0122 20 6 6.4983 -4.1475 -3.9045 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6887 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8508 0.5684 0.8427 27 1 3.9785 2.1764 0.0903 28 1 5.9578 3.7085 -1.0086 29 1 4.7750 -0.7821 -3.4431 30 1 4.5405 -3.3286 -1.7777 31 1 4.9587 -2.7973 -4.8403 32 1 4.8115 -5.4246 -3.1338 33 1 4.9082 -5.3302 -4.9731 34 1 7.1267 -4.1133 -4.7944 35 1 7.0306 -4.2074 -2.9552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493707153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = -34.957435 kcal Electronic energy + Delta-G solvation = -17213.294605 eV Core-core repulsion = 14406.150295 eV Total energy + Delta-G solvation = -2807.144310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.58004 -37.27388 -36.75200 -34.68497 -31.65063 -31.51939 -29.09528 -25.79367 -24.91278 -23.68968 -22.19035 -21.47835 -19.55322 -18.72900 -16.86424 -16.14778 -15.60679 -15.26561 -15.10568 -14.53745 -14.34175 -14.02531 -13.74028 -13.17156 -12.62599 -12.09773 -11.67077 -11.63438 -11.43104 -11.40373 -11.07346 -11.01590 -10.95322 -10.64322 -10.46599 -10.23665 -10.20258 -10.10657 -9.14846 -8.96335 -8.31918 -8.29268 -7.42801 -6.37693 -4.05726 2.31613 3.11767 3.20057 3.21997 4.08412 4.12718 4.52681 4.60347 4.74898 5.03794 5.12679 5.22263 5.29031 5.65131 5.69513 5.75952 5.76615 5.98638 6.02404 6.04543 6.11761 6.19741 6.26907 6.32610 6.39942 6.60130 6.90167 7.21594 7.26609 7.36349 7.47102 7.91474 7.99815 8.41205 9.10532 9.60870 10.07729 10.64017 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.008732 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.760507 B = 3205.807216 C = 4452.148135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.050 3.950 4 C 0.115 3.885 5 N -0.431 5.431 6 C -0.334 4.334 7 H 0.089 0.911 8 C 0.041 3.959 9 N -0.861 5.861 10 Si 0.914 3.086 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.503 3.497 15 O -0.594 6.594 16 C -0.148 4.148 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.179 4.179 20 C -0.174 4.174 21 H 0.030 0.970 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.270 0.730 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -4.462 -3.901 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.028 4.028 4 C -0.009 4.009 5 N -0.149 5.149 6 C -0.462 4.462 7 H 0.106 0.894 8 C -0.165 4.165 9 N -0.498 5.498 10 Si 0.740 3.260 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.294 3.706 15 O -0.480 6.480 16 C -0.169 4.169 17 C -0.122 4.122 18 C -0.137 4.137 19 C -0.216 4.216 20 C -0.211 4.211 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.182 -4.752 -3.319 6.613 hybrid contribution -0.287 1.208 -0.751 1.451 sum -3.470 -3.544 -4.071 6.416 Atomic orbital electron populations 1.22623 0.83441 1.01627 0.98823 1.88157 1.17455 1.28052 1.95065 1.23101 0.96528 0.84324 0.98808 1.21476 0.89420 1.01871 0.88172 1.43137 1.56782 1.04213 1.10761 1.19410 1.38787 1.00179 0.87843 0.89361 1.25422 0.93987 0.99496 0.97594 1.69878 1.28422 1.23277 1.28179 0.86145 0.77839 0.80699 0.81309 1.20310 1.20924 1.19298 1.18456 0.80822 0.83313 0.88055 1.90619 1.56070 1.62942 1.38367 1.22808 1.00312 0.94956 0.98815 1.22731 0.98170 0.95435 0.95854 1.21217 1.01354 0.93191 0.97939 1.22952 1.01337 0.94378 1.02906 1.22935 0.90614 1.04354 1.03194 0.95155 0.94966 0.90591 0.94363 0.93412 0.91675 0.86594 0.91980 0.85962 0.86426 0.87442 0.88702 0.88962 0.88843 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.37 -8.21 9.74 -37.08 -0.36 -8.57 16 3 C 0.05 1.07 6.28 37.16 0.23 1.30 16 4 C 0.11 2.82 5.47 -4.04 -0.02 2.80 16 5 N -0.43 -11.26 2.48 -116.21 -0.29 -11.55 16 6 C -0.33 -8.55 8.39 -15.02 -0.13 -8.68 16 7 H 0.09 2.18 6.83 -52.49 -0.36 1.82 16 8 C 0.04 1.02 4.99 -17.45 -0.09 0.93 16 9 N -0.86 -22.59 11.43 55.50 0.63 -21.96 16 10 Si 0.91 19.23 29.60 -169.99 -5.03 14.20 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 C 0.50 13.15 7.24 -12.73 -0.09 13.06 16 15 O -0.59 -16.78 15.19 3.37 0.05 -16.73 16 16 C -0.15 -3.29 8.93 -37.83 -0.34 -3.63 16 17 C -0.10 -1.95 9.24 -36.09 -0.33 -2.29 16 18 C -0.12 -1.81 6.01 -91.77 -0.55 -2.36 16 19 C -0.18 -2.24 10.23 -26.73 -0.27 -2.52 16 20 C -0.17 -2.27 10.23 -26.73 -0.27 -2.55 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.68 7.36 -51.93 -0.38 1.30 16 27 H 0.12 2.92 5.53 -51.93 -0.29 2.64 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.12 2.61 6.55 -52.49 -0.34 2.26 16 30 H 0.12 2.39 7.49 -52.49 -0.39 2.00 16 31 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -30.20 301.27 -6.33 -36.53 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.13 Total: 5.82 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.75 Total: -2.28 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.35 Total: -33.50 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.31 Total: -25.31 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.20 -6.33 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493707153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.572 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds