Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00270 * 2 1 4 4 C 1.53003 * 109.46874 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47398 * 65.00186 * 4 3 2 6 6 C 1.36821 * 120.00317 * 87.90378 * 5 4 3 7 7 H 1.08001 * 120.00439 * 218.76657 * 6 5 4 8 8 C 1.39073 * 119.99336 * 38.49612 * 6 5 4 9 9 N 1.31354 * 120.00616 * 20.38539 * 8 6 5 10 10 Si 1.86801 * 119.99596 * 200.39360 * 8 6 5 11 11 H 1.48501 * 109.47512 * 89.99656 * 10 8 6 12 12 H 1.48508 * 109.47044 * 210.00058 * 10 8 6 13 13 H 1.48499 * 109.47037 * 329.99300 * 10 8 6 14 14 C 1.34776 * 120.00022 * 267.91117 * 5 4 3 15 15 O 1.21659 * 120.00137 * 359.97438 * 14 5 4 16 16 C 1.46950 * 120.00151 * 179.97438 * 14 5 4 17 17 C 1.33127 * 119.99963 * 179.97438 * 16 14 5 18 18 C 1.50703 * 119.99620 * 180.02562 * 17 16 14 19 19 C 1.53003 * 117.49556 * 188.62340 * 18 17 16 20 20 C 1.52999 * 60.00072 * 252.50950 * 19 18 17 21 21 H 1.08996 * 109.47418 * 300.00545 * 1 2 3 22 22 H 1.09008 * 109.46904 * 60.00324 * 1 2 3 23 23 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47010 * 60.00035 * 3 2 1 25 25 H 1.08994 * 109.46942 * 299.99693 * 3 2 1 26 26 H 1.09001 * 109.47323 * 304.99687 * 4 3 2 27 27 H 1.09001 * 109.46539 * 185.00369 * 4 3 2 28 28 H 0.96998 * 119.99752 * 180.02562 * 9 8 6 29 29 H 1.07998 * 120.00269 * 359.97438 * 16 14 5 30 30 H 1.07996 * 120.00336 * 359.97438 * 17 16 14 31 31 H 1.09001 * 115.55289 * 334.32653 * 18 17 16 32 32 H 1.09004 * 117.49763 * 0.02562 * 19 18 17 33 33 H 1.09000 * 117.49971 * 145.01984 * 19 18 17 34 34 H 1.08998 * 117.50218 * 252.51461 * 20 19 18 35 35 H 1.09000 * 117.51837 * 107.47605 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2266 1.3408 -2.3489 7 1 3.9440 0.9937 -3.3318 8 6 4.8396 2.5801 -2.1988 9 7 5.5307 2.8440 -1.1134 10 14 4.6797 3.8697 -3.5407 11 1 3.4819 4.7084 -3.2813 12 1 5.8920 4.7274 -3.5499 13 1 4.5383 3.1986 -4.8579 14 6 4.1364 -0.7726 -1.3206 15 8 3.9145 -1.4635 -0.3441 16 6 4.5784 -1.3953 -2.5761 17 6 4.7366 -2.7154 -2.6448 18 6 5.1905 -3.3538 -3.9322 19 6 5.1602 -4.8814 -4.0122 20 6 6.4983 -4.1475 -3.9045 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6887 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8508 0.5684 0.8427 27 1 3.9785 2.1764 0.0903 28 1 5.9578 3.7085 -1.0086 29 1 4.7750 -0.7821 -3.4431 30 1 4.5405 -3.3286 -1.7777 31 1 4.9587 -2.7973 -4.8403 32 1 4.8115 -5.4246 -3.1338 33 1 4.9082 -5.3302 -4.9731 34 1 7.1267 -4.1133 -4.7944 35 1 7.0306 -4.2074 -2.9552 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493707153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = -53.071172 kcal Electronic energy + Delta-G solvation = -17214.080076 eV Core-core repulsion = 14406.150295 eV Total energy + Delta-G solvation = -2807.929780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48217 -38.69006 -38.21936 -36.63201 -33.53938 -33.22498 -30.84345 -27.25975 -26.85450 -25.28796 -23.21927 -23.08726 -21.20596 -20.47330 -18.65556 -17.97888 -17.25759 -16.99596 -16.43508 -16.24832 -15.99284 -15.69117 -15.15539 -14.93426 -14.37169 -13.66483 -13.39428 -13.30375 -13.15310 -12.72241 -12.67898 -12.46008 -12.34703 -12.21782 -12.02331 -11.92268 -11.87861 -11.30623 -11.04552 -10.57134 -10.28656 -9.85966 -9.39429 -8.29678 -6.05672 0.64776 1.46524 1.49019 1.59822 2.31223 2.60160 2.95063 2.98918 3.15060 3.24114 3.85432 4.01386 4.15602 4.25445 4.28070 4.36059 4.45688 4.54456 4.56198 4.63645 4.72467 4.77976 4.80969 4.99831 5.03805 5.22252 5.24961 5.29709 5.46992 5.65583 5.73965 6.04892 6.36638 6.47671 7.14352 7.63758 8.11548 8.73256 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.008732 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.760507 B = 3205.807216 C = 4452.148135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.061 3.939 4 C 0.113 3.887 5 N -0.440 5.440 6 C -0.352 4.352 7 H 0.094 0.906 8 C 0.003 3.997 9 N -0.894 5.894 10 Si 0.985 3.015 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.486 3.514 15 O -0.631 6.631 16 C -0.188 4.188 17 C -0.063 4.063 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.164 4.164 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.107 0.893 28 H 0.274 0.726 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 -4.761 -5.913 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.017 4.017 4 C -0.011 4.011 5 N -0.157 5.157 6 C -0.480 4.480 7 H 0.111 0.889 8 C -0.200 4.200 9 N -0.531 5.531 10 Si 0.808 3.192 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.182 1.182 14 C 0.278 3.722 15 O -0.521 6.521 16 C -0.209 4.209 17 C -0.084 4.084 18 C -0.166 4.166 19 C -0.195 4.195 20 C -0.201 4.201 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.602 -5.047 -5.337 8.181 hybrid contribution -0.147 1.176 -0.076 1.188 sum -3.749 -3.871 -5.413 7.638 Atomic orbital electron populations 1.22869 0.80542 1.03095 1.00507 1.88098 1.20713 1.28391 1.95387 1.22902 0.94145 0.84542 1.00073 1.21443 0.92050 1.00497 0.87149 1.43375 1.56642 1.04501 1.11196 1.19687 1.39587 1.00734 0.87981 0.88890 1.26281 0.92984 1.00906 0.99844 1.69981 1.29045 1.23937 1.30130 0.85055 0.77743 0.77704 0.78667 1.19595 1.20865 1.18249 1.19147 0.80496 0.83467 0.89093 1.90564 1.58015 1.63610 1.39868 1.22611 1.04573 0.96045 0.97622 1.22978 0.93980 0.94265 0.97140 1.21260 1.04148 0.95198 0.95989 1.23094 1.00171 0.91834 1.04439 1.23056 0.90410 1.02551 1.04062 0.92758 0.93849 0.89346 0.91449 0.93497 0.94201 0.87535 0.91629 0.85412 0.87919 0.86194 0.88752 0.86110 0.86314 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.41 -18.24 9.74 -147.21 -1.43 -19.67 16 3 C 0.06 2.61 6.28 71.98 0.45 3.07 16 4 C 0.11 5.75 5.47 86.38 0.47 6.22 16 5 N -0.44 -23.78 2.48 -639.81 -1.59 -25.36 16 6 C -0.35 -18.31 8.39 84.12 0.71 -17.60 16 7 H 0.09 4.63 6.83 -2.91 -0.02 4.61 16 8 C 0.00 0.14 4.99 84.96 0.42 0.57 16 9 N -0.89 -47.60 11.43 21.68 0.25 -47.36 16 10 Si 0.99 38.94 29.60 68.60 2.03 40.97 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 13 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 14 C 0.49 26.45 7.24 86.53 0.63 27.07 16 15 O -0.63 -37.38 15.19 -2.45 -0.04 -37.42 16 16 C -0.19 -8.56 8.93 23.41 0.21 -8.35 16 17 C -0.06 -2.44 9.24 24.54 0.23 -2.21 16 18 C -0.15 -4.20 6.01 -11.54 -0.07 -4.27 16 19 C -0.16 -3.46 10.23 30.59 0.31 -3.15 16 20 C -0.16 -3.81 10.23 30.59 0.31 -3.50 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 2.17 7.36 -2.39 -0.02 2.16 16 27 H 0.11 5.58 5.53 -2.39 -0.01 5.57 16 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.13 5.56 6.55 -2.91 -0.02 5.54 16 30 H 0.10 4.25 7.49 -2.91 -0.02 4.23 16 31 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.08 301.27 5.21 -61.87 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.06 Total: 27.03 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 4.92 Total: -0.07 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.34 Total: -72.72 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -1.47 Total: -57.09 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -67.08 5.21 -61.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493707153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.798 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds