Wall clock time and date at job start Sun Mar 29 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47308 * 2 1 4 4 C 1.46504 * 119.99963 * 90.27242 * 3 2 1 5 5 C 1.50708 * 109.46746 * 90.00044 * 4 3 2 6 6 H 1.07992 * 119.99981 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99504 * 179.71983 * 5 4 3 8 8 N 1.31520 * 119.99546 * 180.27434 * 7 5 4 9 9 Si 1.86797 * 120.00296 * 0.27912 * 7 5 4 10 10 H 1.48503 * 109.47222 * 89.99591 * 9 7 5 11 11 H 1.48494 * 109.47219 * 209.99734 * 9 7 5 12 12 H 1.48497 * 109.47155 * 329.99930 * 9 7 5 13 13 C 1.34775 * 119.99969 * 270.26966 * 3 2 1 14 14 O 1.21278 * 120.00102 * 5.11925 * 13 3 2 15 15 C 1.50700 * 120.00077 * 185.10982 * 13 3 2 16 16 H 1.08999 * 110.50891 * 327.04760 * 15 13 3 17 17 C 1.54981 * 110.57056 * 204.29895 * 15 13 3 18 18 C 1.54889 * 102.33444 * 204.35109 * 17 15 13 19 19 C 1.51841 * 104.43545 * 37.61775 * 18 17 15 20 20 O 1.20758 * 126.33849 * 156.18501 * 19 18 17 21 21 C 1.51446 * 107.31547 * 336.21820 * 19 18 17 22 22 H 1.08999 * 109.47248 * 304.41675 * 1 2 3 23 23 H 1.08998 * 109.46905 * 64.41002 * 1 2 3 24 24 H 1.09000 * 109.47708 * 184.41492 * 1 2 3 25 25 H 1.08995 * 109.46904 * 239.99544 * 2 1 3 26 26 H 1.09004 * 109.46662 * 120.00002 * 2 1 3 27 27 H 1.08994 * 109.47442 * 330.00462 * 4 3 2 28 28 H 1.08998 * 109.47085 * 209.99345 * 4 3 2 29 29 H 0.96998 * 119.99316 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.83369 * 322.55889 * 17 15 13 31 31 H 1.09003 * 110.83894 * 85.93462 * 17 15 13 32 32 H 1.09003 * 110.44432 * 156.36119 * 18 17 15 33 33 H 1.09004 * 110.44072 * 278.75844 * 18 17 15 34 34 H 1.09001 * 109.97857 * 241.00321 * 21 19 18 35 35 H 1.08998 * 109.98775 * 119.70258 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2682 2.0698 1.2688 5 6 3.6935 1.8322 1.6970 6 1 4.3478 1.2290 1.0851 7 6 4.1639 2.3901 2.8668 8 7 5.4093 2.1872 3.2377 9 14 3.0324 3.4340 3.9248 10 1 2.3365 2.5673 4.9096 11 1 3.8323 4.4575 4.6443 12 1 2.0289 4.1069 3.0616 13 6 2.2378 2.0183 -1.1672 14 8 1.9439 1.4829 -2.2149 15 6 2.8483 3.3961 -1.1703 16 1 2.5352 3.9546 -0.2882 17 6 2.4630 4.1595 -2.4629 18 6 3.6133 5.1883 -2.5949 19 6 4.8504 4.4332 -2.1422 20 8 5.9923 4.6837 -2.4448 21 6 4.3868 3.3072 -1.2417 22 1 -0.3634 0.5808 0.8478 23 1 -0.3633 0.4439 -0.9268 24 1 -0.3634 -1.0246 0.0791 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.5909 1.6845 2.0308 28 1 2.1008 3.1392 1.1408 29 1 5.7401 2.5794 4.0609 30 1 2.4450 3.4862 -3.3200 31 1 1.5021 4.6605 -2.3456 32 1 3.7207 5.5085 -3.6313 33 1 3.4317 6.0473 -1.9489 34 1 4.8135 3.4270 -0.2459 35 1 4.6853 2.3469 -1.6622 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517746216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:08 Heat of formation + Delta-G solvation = -84.462974 kcal Electronic energy + Delta-G solvation = -17762.418193 eV Core-core repulsion = 14953.127162 eV Total energy + Delta-G solvation = -2809.291031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00002 -38.69828 -35.75756 -35.16188 -32.75885 -30.93931 -28.79709 -27.70090 -26.83550 -23.28338 -22.68863 -20.86689 -19.19056 -18.14900 -17.10514 -16.80798 -15.94575 -15.61502 -14.91339 -14.54576 -14.27335 -13.93293 -13.53293 -13.17944 -13.02972 -12.63189 -12.50279 -12.24869 -11.86593 -11.72515 -11.51477 -11.25755 -11.03162 -10.89021 -10.79510 -10.58792 -10.46792 -10.18378 -9.68297 -9.35707 -9.00999 -8.76395 -7.83509 -6.27267 -4.29390 2.21419 3.12371 3.19212 3.19680 3.22614 3.74546 4.20538 4.42262 4.70903 5.02590 5.05026 5.12251 5.39409 5.53629 5.58804 5.64068 5.66045 5.70379 5.78002 5.94382 6.01707 6.16258 6.17837 6.30871 6.35671 6.46742 6.53454 6.57973 6.67975 7.27280 7.38018 7.75316 8.05693 8.34598 8.76348 8.85211 9.31503 10.84839 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.011114 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.291481 B = 2518.632541 C = 3666.328330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.588 5.588 4 C 0.206 3.794 5 C -0.541 4.541 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.887 5.887 9 Si 0.869 3.131 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.526 3.474 14 O -0.568 6.568 15 C -0.105 4.105 16 H 0.106 0.894 17 C -0.106 4.106 18 C -0.182 4.182 19 C 0.373 3.627 20 O -0.455 6.455 21 C -0.163 4.163 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.267 0.733 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 3.164 -5.631 10.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.318 5.318 4 C 0.084 3.916 5 C -0.579 4.579 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.525 5.525 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.314 3.686 14 O -0.449 6.449 15 C -0.126 4.126 16 H 0.124 0.876 17 C -0.144 4.144 18 C -0.220 4.220 19 C 0.249 3.751 20 O -0.328 6.328 21 C -0.200 4.200 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.639 3.040 -6.147 10.266 hybrid contribution -0.533 0.486 1.042 1.267 sum -8.172 3.526 -5.105 10.260 Atomic orbital electron populations 1.22118 0.96848 1.01365 1.01903 1.21278 0.93372 0.83446 1.02779 1.47961 1.63174 1.13527 1.07112 1.19875 0.97775 0.92744 0.81160 1.21364 0.94945 1.33652 1.07984 0.90179 1.24881 0.94877 0.95816 0.97133 1.69889 1.14773 1.44103 1.23688 0.86964 0.81203 0.80904 0.81368 1.19944 1.20878 1.18872 1.20199 0.77669 0.87491 0.83242 1.90591 1.53940 1.68641 1.31736 1.21980 0.95642 0.94723 1.00236 0.87600 1.22416 0.97264 0.96689 0.97995 1.22921 0.95710 0.99963 1.03411 1.25017 0.88921 0.84147 0.76968 1.90388 1.23200 1.67255 1.51991 1.22494 0.94552 0.99621 1.03382 0.92766 0.92658 0.92301 0.90962 0.90246 0.95231 0.94699 0.92283 0.89399 0.90529 0.89208 0.87887 0.85530 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.97 6.09 -4.04 -0.02 1.95 16 3 N -0.59 -11.35 2.46 -175.06 -0.43 -11.78 16 4 C 0.21 4.24 3.99 -5.19 -0.02 4.22 16 5 C -0.54 -13.30 9.15 -34.44 -0.32 -13.62 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 7 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.89 -24.85 13.96 55.43 0.77 -24.07 16 9 Si 0.87 18.95 27.47 -169.99 -4.67 14.28 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 13 C 0.53 10.03 6.69 -10.99 -0.07 9.95 16 14 O -0.57 -11.81 15.45 5.56 0.09 -11.72 16 15 C -0.10 -1.72 2.67 -90.06 -0.24 -1.96 16 16 H 0.11 1.70 5.99 -51.93 -0.31 1.39 16 17 C -0.11 -1.42 6.23 -24.69 -0.15 -1.58 16 18 C -0.18 -2.28 6.72 -26.32 -0.18 -2.45 16 19 C 0.37 6.11 7.88 -28.10 -0.22 5.89 16 20 O -0.45 -8.81 17.99 6.00 0.11 -8.70 16 21 C -0.16 -2.85 6.10 -26.85 -0.16 -3.02 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.27 7.51 -51.93 -0.39 0.88 16 26 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 27 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 28 H 0.04 0.70 4.99 -51.93 -0.26 0.44 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 30 H 0.09 1.28 7.24 -51.93 -0.38 0.91 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.13 2.49 7.50 -51.93 -0.39 2.10 16 35 H 0.10 1.81 7.82 -51.93 -0.41 1.41 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -29.27 291.15 -5.92 -35.19 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.07 Total: 3.16 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.11 Total: -0.74 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.34 Total: -35.85 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.19 Total: -20.42 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.67 Total: 14.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.27 -5.92 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517746216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.277 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds