Wall clock time and date at job start Sun Mar 29 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47308 * 2 1 4 4 C 1.46504 * 119.99963 * 90.27242 * 3 2 1 5 5 C 1.50708 * 109.46746 * 90.00044 * 4 3 2 6 6 H 1.07992 * 119.99981 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99504 * 179.71983 * 5 4 3 8 8 N 1.31520 * 119.99546 * 180.27434 * 7 5 4 9 9 Si 1.86797 * 120.00296 * 0.27912 * 7 5 4 10 10 H 1.48503 * 109.47222 * 89.99591 * 9 7 5 11 11 H 1.48494 * 109.47219 * 209.99734 * 9 7 5 12 12 H 1.48497 * 109.47155 * 329.99930 * 9 7 5 13 13 C 1.34775 * 119.99969 * 270.26966 * 3 2 1 14 14 O 1.21278 * 120.00102 * 5.11925 * 13 3 2 15 15 C 1.50700 * 120.00077 * 185.10982 * 13 3 2 16 16 H 1.08999 * 110.50891 * 327.04760 * 15 13 3 17 17 C 1.54981 * 110.57056 * 204.29895 * 15 13 3 18 18 C 1.54889 * 102.33444 * 204.35109 * 17 15 13 19 19 C 1.51841 * 104.43545 * 37.61775 * 18 17 15 20 20 O 1.20758 * 126.33849 * 156.18501 * 19 18 17 21 21 C 1.51446 * 107.31547 * 336.21820 * 19 18 17 22 22 H 1.08999 * 109.47248 * 304.41675 * 1 2 3 23 23 H 1.08998 * 109.46905 * 64.41002 * 1 2 3 24 24 H 1.09000 * 109.47708 * 184.41492 * 1 2 3 25 25 H 1.08995 * 109.46904 * 239.99544 * 2 1 3 26 26 H 1.09004 * 109.46662 * 120.00002 * 2 1 3 27 27 H 1.08994 * 109.47442 * 330.00462 * 4 3 2 28 28 H 1.08998 * 109.47085 * 209.99345 * 4 3 2 29 29 H 0.96998 * 119.99316 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.83369 * 322.55889 * 17 15 13 31 31 H 1.09003 * 110.83894 * 85.93462 * 17 15 13 32 32 H 1.09003 * 110.44432 * 156.36119 * 18 17 15 33 33 H 1.09004 * 110.44072 * 278.75844 * 18 17 15 34 34 H 1.09001 * 109.97857 * 241.00321 * 21 19 18 35 35 H 1.08998 * 109.98775 * 119.70258 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2682 2.0698 1.2688 5 6 3.6935 1.8322 1.6970 6 1 4.3478 1.2290 1.0851 7 6 4.1639 2.3901 2.8668 8 7 5.4093 2.1872 3.2377 9 14 3.0324 3.4340 3.9248 10 1 2.3365 2.5673 4.9096 11 1 3.8323 4.4575 4.6443 12 1 2.0289 4.1069 3.0616 13 6 2.2378 2.0183 -1.1672 14 8 1.9439 1.4829 -2.2149 15 6 2.8483 3.3961 -1.1703 16 1 2.5352 3.9546 -0.2882 17 6 2.4630 4.1595 -2.4629 18 6 3.6133 5.1883 -2.5949 19 6 4.8504 4.4332 -2.1422 20 8 5.9923 4.6837 -2.4448 21 6 4.3868 3.3072 -1.2417 22 1 -0.3634 0.5808 0.8478 23 1 -0.3633 0.4439 -0.9268 24 1 -0.3634 -1.0246 0.0791 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.5909 1.6845 2.0308 28 1 2.1008 3.1392 1.1408 29 1 5.7401 2.5794 4.0609 30 1 2.4450 3.4862 -3.3200 31 1 1.5021 4.6605 -2.3456 32 1 3.7207 5.5085 -3.6313 33 1 3.4317 6.0473 -1.9489 34 1 4.8135 3.4270 -0.2459 35 1 4.6853 2.3469 -1.6622 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517746216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:08 Heat of formation + Delta-G solvation = -102.582811 kcal Electronic energy + Delta-G solvation = -17763.203928 eV Core-core repulsion = 14953.127162 eV Total energy + Delta-G solvation = -2810.076766 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42781 -40.14953 -37.18216 -36.67061 -34.63750 -32.37107 -30.11081 -29.40442 -28.15882 -24.59393 -24.48051 -22.15499 -20.51324 -19.67388 -18.96217 -18.31331 -17.38591 -16.98397 -16.43550 -16.10154 -15.74418 -15.48245 -14.92136 -14.68994 -14.35884 -14.21261 -13.88389 -13.73852 -13.33966 -13.18168 -12.77378 -12.65162 -12.45848 -12.42139 -12.17957 -12.02837 -11.85113 -11.69579 -11.51557 -10.87760 -10.66242 -10.43092 -9.42949 -8.25746 -6.32635 0.87873 1.43037 1.44188 1.53258 1.67502 2.29228 2.37399 3.07605 3.16954 3.48570 3.72786 3.82137 4.14689 4.28970 4.33805 4.35931 4.41008 4.49002 4.55436 4.73381 4.80821 4.86532 4.94493 4.96379 4.99537 5.06789 5.20001 5.31794 5.32971 5.48103 5.74406 6.21785 6.43337 6.63456 6.74860 7.26251 7.36906 8.90074 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.011114 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.291481 B = 2518.632541 C = 3666.328330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.212 3.788 5 C -0.532 4.532 6 H 0.031 0.969 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.228 1.228 13 C 0.520 3.480 14 O -0.587 6.587 15 C -0.104 4.104 16 H 0.117 0.883 17 C -0.096 4.096 18 C -0.164 4.164 19 C 0.375 3.625 20 O -0.490 6.490 21 C -0.163 4.163 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 5.031 -5.761 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.324 5.324 4 C 0.090 3.910 5 C -0.570 4.570 6 H 0.050 0.950 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.759 3.241 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.151 1.151 13 C 0.309 3.691 14 O -0.470 6.470 15 C -0.125 4.125 16 H 0.135 0.865 17 C -0.133 4.133 18 C -0.201 4.201 19 C 0.253 3.747 20 O -0.366 6.366 21 C -0.201 4.201 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.115 0.885 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.660 4.891 -6.299 13.313 hybrid contribution 0.480 -0.243 1.037 1.169 sum -10.180 4.649 -5.261 12.366 Atomic orbital electron populations 1.22006 0.94093 1.03094 1.01752 1.21431 0.95612 0.82487 1.02071 1.48070 1.63271 1.14252 1.06846 1.19750 0.95092 0.94089 0.82020 1.21471 0.96434 1.32060 1.07060 0.95050 1.25768 0.96233 0.97325 0.98675 1.70067 1.17406 1.46297 1.24552 0.85889 0.79544 0.78991 0.79688 1.19405 1.21649 1.15101 1.20667 0.77216 0.88402 0.82809 1.90575 1.54734 1.69413 1.32237 1.22035 0.93991 0.93735 1.02695 0.86490 1.22421 0.99105 0.96345 0.95465 1.22891 0.92051 0.99782 1.05337 1.25372 0.89708 0.83703 0.75882 1.90377 1.25020 1.68052 1.53186 1.22411 0.95938 0.99552 1.02174 0.92072 0.93355 0.89822 0.92070 0.90640 0.93712 0.92670 0.92490 0.90637 0.87296 0.86769 0.84813 0.88474 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.11 3.61 6.09 86.38 0.53 4.14 16 3 N -0.59 -22.48 2.46 -826.16 -2.03 -24.51 16 4 C 0.21 8.40 3.99 85.63 0.34 8.74 16 5 C -0.53 -26.60 9.15 25.60 0.23 -26.36 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 7 C 0.02 0.97 5.47 84.65 0.46 1.43 16 8 N -0.94 -54.74 13.96 21.45 0.30 -54.44 16 9 Si 0.94 37.88 27.47 68.60 1.88 39.77 16 10 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.23 -7.88 6.54 99.48 0.65 -7.23 16 13 C 0.52 19.42 6.69 87.66 0.59 20.01 16 14 O -0.59 -24.10 15.45 -3.02 -0.05 -24.15 16 15 C -0.10 -3.25 2.67 -10.43 -0.03 -3.28 16 16 H 0.12 3.40 5.99 -2.39 -0.01 3.39 16 17 C -0.10 -2.26 6.23 31.92 0.20 -2.06 16 18 C -0.16 -3.49 6.72 30.86 0.21 -3.28 16 19 C 0.37 12.03 7.88 29.70 0.23 12.26 16 20 O -0.49 -19.10 17.99 -1.44 -0.03 -19.13 16 21 C -0.16 -5.84 6.10 30.52 0.19 -5.65 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 2.18 7.51 -2.39 -0.02 2.16 16 26 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 27 H 0.04 1.68 7.51 -2.39 -0.02 1.66 16 28 H 0.06 2.00 4.99 -2.39 -0.01 1.99 16 29 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.07 2.02 7.24 -2.38 -0.02 2.00 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.10 4.04 7.50 -2.39 -0.02 4.03 16 35 H 0.07 2.94 7.82 -2.39 -0.02 2.92 16 Total: -1.00 -66.07 291.15 4.79 -61.29 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.02 Total: 18.52 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 3.69 Total: 2.65 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.73 Total: -78.95 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.07 Total: -43.28 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.88 Total: 39.77 kcal Total: -66.07 4.79 -61.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517746216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.297 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds