Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46900 * 2 1 4 4 C 1.46504 * 119.99931 * 266.15701 * 3 2 1 5 5 C 1.50695 * 109.47242 * 269.99990 * 4 3 2 6 6 H 1.08002 * 119.99856 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00143 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00167 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00003 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47205 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47081 * 119.99933 * 9 7 5 12 12 H 1.48501 * 109.46846 * 239.99627 * 9 7 5 13 13 C 1.34775 * 120.00385 * 86.15910 * 3 2 1 14 14 O 1.21285 * 119.99659 * 4.59323 * 13 3 2 15 15 C 1.50699 * 120.00212 * 184.32162 * 13 3 2 16 16 H 1.08997 * 110.73796 * 33.19476 * 15 13 3 17 17 C 1.54981 * 110.83341 * 156.62934 * 15 13 3 18 18 C 1.54286 * 103.75271 * 155.29370 * 17 15 13 19 19 C 1.51443 * 106.84675 * 336.87734 * 18 17 15 20 20 O 1.20763 * 126.34084 * 179.62400 * 19 18 17 21 21 C 1.51845 * 107.31892 * 359.63925 * 19 18 17 22 22 H 1.08993 * 109.47367 * 295.83614 * 1 2 3 23 23 H 1.09002 * 109.46865 * 55.83931 * 1 2 3 24 24 H 1.09003 * 109.47209 * 175.83482 * 1 2 3 25 25 H 1.08995 * 109.47416 * 239.99848 * 2 1 3 26 26 H 1.09000 * 109.46810 * 119.99381 * 2 1 3 27 27 H 1.09003 * 109.46812 * 29.99865 * 4 3 2 28 28 H 1.08999 * 109.47121 * 149.99659 * 4 3 2 29 29 H 0.97001 * 120.00060 * 179.97438 * 8 7 5 30 30 H 1.09007 * 110.57080 * 273.85972 * 17 15 13 31 31 H 1.08998 * 110.57788 * 36.72696 * 17 15 13 32 32 H 1.09002 * 109.98357 * 96.22207 * 18 17 15 33 33 H 1.08994 * 109.98389 * 217.48823 * 18 17 15 34 34 H 1.08994 * 110.44183 * 265.05248 * 21 19 18 35 35 H 1.09009 * 110.43766 * 142.52899 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3426 2.0435 -1.2659 5 6 3.7903 1.7981 -1.6048 6 1 4.4071 1.2075 -0.9435 7 6 4.3272 2.3267 -2.7594 8 7 3.5759 3.0446 -3.5654 9 14 6.1217 2.0219 -3.1798 10 1 6.7442 1.1900 -2.1189 11 1 6.2116 1.3133 -4.4817 12 1 6.8358 3.3206 -3.2727 13 6 2.1692 2.0427 1.1645 14 8 1.9810 1.4692 2.2165 15 6 2.5778 3.4933 1.1597 16 1 2.1687 4.0066 0.2896 17 6 2.1382 4.1940 2.4703 18 6 3.1225 5.3747 2.6029 19 6 4.3563 5.0093 1.8044 20 8 5.3452 5.6881 1.6646 21 6 4.1196 3.6314 1.2119 22 1 -0.3634 0.4478 0.9249 23 1 -0.3633 0.5771 -0.8504 24 1 -0.3634 -1.0250 -0.0746 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.7109 1.6420 -2.0583 28 1 2.1684 3.1153 -1.1703 29 1 3.9537 3.4168 -4.3776 30 1 1.1138 4.5571 2.3855 31 1 2.2363 3.5166 3.3185 32 1 2.6727 6.2818 2.1992 33 1 3.3862 5.5240 3.6498 34 1 4.5493 2.8622 1.8535 35 1 4.5414 3.5709 0.2086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517746217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -106.011232 kcal Electronic energy + Delta-G solvation = -17736.248993 eV Core-core repulsion = 14926.023559 eV Total energy + Delta-G solvation = -2810.225434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36966 -40.11902 -37.13867 -36.62413 -34.69941 -32.22105 -30.00021 -28.96919 -28.08413 -24.94580 -24.58924 -22.17981 -20.41169 -19.73975 -18.50961 -18.27324 -17.37893 -16.85272 -16.49210 -16.08341 -15.90669 -15.37374 -14.84191 -14.57140 -14.37255 -14.23916 -13.83642 -13.61131 -13.21282 -13.11344 -12.76384 -12.74196 -12.61987 -12.41048 -12.19895 -12.06011 -11.79802 -11.71688 -11.49111 -10.86405 -10.57456 -10.37355 -9.44618 -8.21380 -6.33219 0.88916 1.36808 1.42221 1.49894 1.73243 2.29754 2.44047 3.09255 3.19181 3.48957 3.78284 3.89650 4.15141 4.30388 4.33024 4.39005 4.44387 4.48208 4.57708 4.80426 4.87129 4.89219 4.97310 5.02962 5.07845 5.18334 5.25190 5.33680 5.35960 5.66928 5.88119 6.06875 6.45122 6.58923 6.83470 7.31219 7.42513 8.84023 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.011561 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.699586 B = 2421.454717 C = 3836.401839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.250 3.750 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.027 3.973 8 N -0.917 5.917 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.283 1.283 13 C 0.523 3.477 14 O -0.589 6.589 15 C -0.104 4.104 16 H 0.103 0.897 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.377 3.623 20 O -0.488 6.488 21 C -0.168 4.168 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 0.921 8.191 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.574 4.574 6 H 0.070 0.930 7 C -0.174 4.174 8 N -0.556 5.556 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.209 1.209 13 C 0.312 3.688 14 O -0.471 6.471 15 C -0.126 4.126 16 H 0.121 0.879 17 C -0.133 4.133 18 C -0.203 4.203 19 C 0.255 3.745 20 O -0.364 6.364 21 C -0.206 4.206 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.560 1.048 8.452 9.660 hybrid contribution 1.085 -0.348 -0.912 1.459 sum -3.475 0.700 7.540 8.332 Atomic orbital electron populations 1.22010 0.94589 1.03027 1.01380 1.21408 0.95221 0.82729 1.02192 1.48304 1.62760 1.14147 1.07611 1.19146 0.94726 0.93165 0.80049 1.21639 0.96432 1.32784 1.06527 0.93022 1.25503 1.01084 0.94789 0.96028 1.69985 1.37297 1.35016 1.13296 0.85735 0.81155 0.77957 0.78284 1.19550 1.20293 1.20879 1.20527 0.76077 0.89343 0.82885 1.90561 1.54549 1.70266 1.31753 1.22097 0.95614 0.92888 1.01960 0.87896 1.22255 0.99891 0.95668 0.95487 1.22625 0.93922 1.00861 1.02883 1.25287 0.86676 0.86590 0.75921 1.90383 1.33350 1.57227 1.55415 1.22769 0.96086 0.97990 1.03788 0.93393 0.92897 0.89597 0.90617 0.91549 0.96014 0.94640 0.92416 0.88414 0.89859 0.86128 0.85776 0.88144 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 10.22 71.98 0.74 -3.65 16 2 C 0.11 3.75 6.13 86.38 0.53 4.28 16 3 N -0.60 -23.91 2.46 -826.15 -2.03 -25.94 16 4 C 0.25 11.33 5.02 85.63 0.43 11.76 16 5 C -0.54 -26.79 8.26 25.60 0.21 -26.58 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.03 1.37 5.46 84.65 0.46 1.83 16 8 N -0.92 -49.43 13.29 21.45 0.28 -49.15 16 9 Si 0.94 41.95 29.54 68.60 2.03 43.98 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.52 20.10 6.83 87.66 0.60 20.70 16 14 O -0.59 -24.27 15.43 -3.05 -0.05 -24.32 16 15 C -0.10 -3.44 2.56 -10.22 -0.03 -3.46 16 16 H 0.10 3.48 6.17 -2.39 -0.01 3.46 16 17 C -0.10 -2.34 6.18 31.71 0.20 -2.14 16 18 C -0.17 -3.61 6.69 30.52 0.20 -3.41 16 19 C 0.38 11.85 7.88 29.70 0.23 12.08 16 20 O -0.49 -18.56 17.99 -1.46 -0.03 -18.59 16 21 C -0.17 -5.85 6.15 30.86 0.19 -5.66 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 26 H 0.07 2.35 7.48 -2.39 -0.02 2.34 16 27 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 28 H 0.04 1.65 5.81 -2.39 -0.01 1.64 16 29 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.08 2.18 7.22 -2.39 -0.02 2.16 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 3.47 8.04 -2.39 -0.02 3.45 16 35 H 0.09 3.65 7.00 -2.38 -0.02 3.63 16 Total: -1.00 -60.72 294.22 5.04 -55.68 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.07 Total: 12.58 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.77 Total: 5.75 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.75 Total: -75.09 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.07 Total: -42.91 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -60.72 5.04 -55.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517746217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.328 kcal (2) G-P(sol) polarization free energy of solvation -60.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds