Wall clock time and date at job start Sun Mar 29 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47004 * 2 1 4 4 H 1.09003 * 109.47178 * 305.29724 * 3 2 1 5 5 C 1.50700 * 109.47241 * 185.29370 * 3 2 1 6 6 H 1.07991 * 119.99796 * 240.00043 * 5 3 2 7 7 C 1.37871 * 119.99967 * 60.00606 * 5 3 2 8 8 N 1.31517 * 119.99923 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47339 * 89.99778 * 9 7 5 11 11 H 1.48499 * 109.46923 * 209.99879 * 9 7 5 12 12 H 1.48495 * 109.46683 * 329.99424 * 9 7 5 13 13 N 1.46904 * 109.46543 * 65.29454 * 3 2 1 14 14 C 1.46904 * 110.99767 * 205.81217 * 13 3 2 15 15 H 1.08994 * 109.47052 * 328.22423 * 14 13 3 16 16 C 1.52998 * 109.46704 * 88.22373 * 14 13 3 17 17 C 1.50700 * 109.46836 * 208.22298 * 14 13 3 18 18 N 1.31064 * 126.66260 * 314.97127 * 17 14 13 19 19 N 1.28841 * 107.99145 * 180.02562 * 18 17 14 20 20 N 1.28743 * 109.39669 * 0.02562 * 19 18 17 21 21 N 1.29020 * 108.80578 * 0.02562 * 20 19 18 22 22 C 1.46496 * 126.43311 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47588 * 298.70715 * 1 2 3 24 24 H 1.09004 * 109.47662 * 58.71087 * 1 2 3 25 25 H 1.09011 * 109.46990 * 178.70627 * 1 2 3 26 26 H 1.09010 * 109.47303 * 240.00505 * 2 1 3 27 27 H 1.08992 * 109.47324 * 120.00088 * 2 1 3 28 28 H 0.97006 * 120.00155 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00328 * 329.76501 * 13 3 2 30 30 H 1.09002 * 109.47535 * 63.72417 * 16 14 13 31 31 H 1.09004 * 109.46918 * 183.71954 * 16 14 13 32 32 H 1.08994 * 109.47332 * 303.71798 * 16 14 13 33 33 H 1.08996 * 109.47640 * 90.02075 * 22 21 20 34 34 H 1.09003 * 109.46992 * 210.01976 * 22 21 20 35 35 H 1.09000 * 109.47450 * 330.01898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6012 1.9831 -0.8388 5 6 3.5412 1.4446 -0.1311 6 1 4.1502 1.8879 0.6428 7 6 4.1372 0.8808 -1.2391 8 7 3.3956 0.3407 -2.1814 9 14 5.9982 0.8827 -1.4013 10 1 6.5501 -0.3504 -0.7848 11 1 6.3697 0.9267 -2.8384 12 1 6.5540 2.0734 -0.7097 13 7 1.6573 2.0971 1.2583 14 6 1.5589 3.5526 1.0858 15 1 2.2780 3.8789 0.3346 16 6 0.1445 3.9176 0.6305 17 6 1.8566 4.2349 2.3961 18 7 1.3944 3.8997 3.5758 19 7 1.8771 4.7232 4.4411 20 7 2.6349 5.5755 3.8438 21 7 2.6473 5.3082 2.5817 22 6 3.3851 6.0351 1.5457 23 1 -0.3634 0.4936 0.9013 24 1 -0.3634 0.5337 -0.8782 25 1 -0.3633 -1.0275 -0.0232 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8149 -0.0564 -2.9608 29 1 0.7942 1.7162 1.6162 30 1 -0.5685 3.6511 1.4107 31 1 0.0897 4.9893 0.4389 32 1 -0.0953 3.3726 -0.2825 33 1 4.3750 5.5946 1.4277 34 1 2.8440 5.9709 0.6016 35 1 3.4850 7.0808 1.8367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522011109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:38 Heat of formation + Delta-G solvation = 110.757692 kcal Electronic energy + Delta-G solvation = -17671.572603 eV Core-core repulsion = 14935.332478 eV Total energy + Delta-G solvation = -2736.240126 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.76764 -37.25783 -35.33413 -33.97375 -31.93978 -30.97157 -28.76941 -28.14029 -26.25344 -24.30888 -23.07594 -22.55519 -20.63756 -19.71065 -17.19803 -16.90665 -16.32426 -15.34438 -15.10303 -14.30073 -13.98632 -13.64516 -13.55890 -12.94551 -12.80936 -12.56774 -12.37883 -11.94412 -11.83999 -11.57843 -11.25525 -11.10220 -10.96717 -10.72676 -10.64017 -10.54156 -10.07931 -9.97421 -9.74948 -9.55811 -9.20860 -8.46716 -7.46418 -6.08986 -4.14332 1.59316 2.29345 2.66472 3.23543 3.31191 3.33185 4.29713 4.36000 4.46742 4.89099 4.96898 5.18205 5.23201 5.27425 5.40857 5.52150 5.71952 5.95660 6.01707 6.10652 6.11746 6.12838 6.29126 6.36547 6.48528 6.78730 6.95771 7.04463 7.34229 7.67920 7.78256 8.08695 8.26083 8.57878 8.93109 8.99987 9.51515 10.95880 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.008449 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.634493 B = 3313.274219 C = 4133.703351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.500 4.500 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.672 5.672 14 C 0.169 3.831 15 H 0.106 0.894 16 C -0.174 4.174 17 C 0.220 3.780 18 N -0.296 5.296 19 N -0.086 5.086 20 N -0.114 5.114 21 N -0.313 5.313 22 C 0.080 3.920 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.101 0.899 27 H 0.043 0.957 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 8.513 1.000 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.026 0.974 5 C -0.538 4.538 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.304 5.304 14 C 0.054 3.946 15 H 0.124 0.876 16 C -0.234 4.234 17 C -0.059 4.059 18 N -0.146 5.146 19 N -0.081 5.081 20 N -0.100 5.100 21 N -0.114 5.114 22 C -0.061 4.061 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.723 8.580 2.471 9.335 hybrid contribution 0.550 0.029 -1.602 1.694 sum -2.173 8.609 0.869 8.922 Atomic orbital electron populations 1.21900 0.99399 0.99887 0.99740 1.21771 0.91418 0.99954 1.03326 1.19236 0.95462 0.90243 0.83603 0.97405 1.21178 0.91126 1.37214 1.04323 0.92291 1.24933 0.98072 0.95445 0.95782 1.69860 1.34772 1.38931 1.09615 0.86572 0.85740 0.78527 0.76971 1.20669 1.21325 1.20125 1.60458 1.37723 0.98960 1.33290 1.19874 0.97053 0.91314 0.86323 0.87612 1.22493 0.96698 1.01632 1.02613 1.26489 0.91963 0.88122 0.99367 1.74943 1.22512 1.20189 0.96918 1.78522 1.06801 0.99923 1.22819 1.78751 1.19301 1.22480 0.89464 1.48326 1.33103 1.22555 1.07452 1.22347 0.97762 0.97740 0.88294 0.94375 0.93809 0.94258 0.88062 0.93843 0.92912 0.84697 0.91731 0.92740 0.90574 0.88302 0.87708 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.13 -2.79 5.36 -26.73 -0.14 -2.93 16 3 C 0.22 4.99 1.83 -68.86 -0.13 4.86 16 4 H 0.01 0.20 7.34 -51.93 -0.38 -0.18 16 5 C -0.50 -12.76 8.56 -34.44 -0.29 -13.05 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.67 -13.35 6.04 -102.16 -0.62 -13.96 16 14 C 0.17 2.84 2.67 -68.86 -0.18 2.66 16 15 H 0.11 1.78 6.69 -51.93 -0.35 1.43 16 16 C -0.17 -2.43 9.13 37.16 0.34 -2.09 16 17 C 0.22 3.83 6.97 -155.44 -1.08 2.74 16 18 N -0.30 -5.81 12.36 32.70 0.40 -5.40 16 19 N -0.09 -1.69 13.43 60.35 0.81 -0.88 16 20 N -0.11 -2.00 13.29 60.35 0.80 -1.20 16 21 N -0.31 -4.82 3.75 -65.03 -0.24 -5.06 16 22 C 0.08 0.80 11.04 59.84 0.66 1.46 16 23 H 0.04 0.63 6.48 -51.93 -0.34 0.29 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.10 2.53 5.95 -51.92 -0.31 2.22 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.33 6.30 6.20 -39.29 -0.24 6.06 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.84 7.41 -51.93 -0.38 0.45 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -29.75 292.44 -4.30 -34.05 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.90 Total: 3.14 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.56 Total: -7.31 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 1.78 Total: -49.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.75 -4.30 -34.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.810 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds