Wall clock time and date at job start Sun Mar 29 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47004 * 2 1 4 4 H 1.09003 * 109.47178 * 305.29724 * 3 2 1 5 5 C 1.50700 * 109.47241 * 185.29370 * 3 2 1 6 6 H 1.07991 * 119.99796 * 240.00043 * 5 3 2 7 7 C 1.37871 * 119.99967 * 60.00606 * 5 3 2 8 8 N 1.31517 * 119.99923 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47339 * 89.99778 * 9 7 5 11 11 H 1.48499 * 109.46923 * 209.99879 * 9 7 5 12 12 H 1.48495 * 109.46683 * 329.99424 * 9 7 5 13 13 N 1.46904 * 109.46543 * 65.29454 * 3 2 1 14 14 C 1.46904 * 110.99767 * 205.81217 * 13 3 2 15 15 H 1.08994 * 109.47052 * 328.22423 * 14 13 3 16 16 C 1.52998 * 109.46704 * 88.22373 * 14 13 3 17 17 C 1.50700 * 109.46836 * 208.22298 * 14 13 3 18 18 N 1.31064 * 126.66260 * 314.97127 * 17 14 13 19 19 N 1.28841 * 107.99145 * 180.02562 * 18 17 14 20 20 N 1.28743 * 109.39669 * 0.02562 * 19 18 17 21 21 N 1.29020 * 108.80578 * 0.02562 * 20 19 18 22 22 C 1.46496 * 126.43311 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.47588 * 298.70715 * 1 2 3 24 24 H 1.09004 * 109.47662 * 58.71087 * 1 2 3 25 25 H 1.09011 * 109.46990 * 178.70627 * 1 2 3 26 26 H 1.09010 * 109.47303 * 240.00505 * 2 1 3 27 27 H 1.08992 * 109.47324 * 120.00088 * 2 1 3 28 28 H 0.97006 * 120.00155 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00328 * 329.76501 * 13 3 2 30 30 H 1.09002 * 109.47535 * 63.72417 * 16 14 13 31 31 H 1.09004 * 109.46918 * 183.71954 * 16 14 13 32 32 H 1.08994 * 109.47332 * 303.71798 * 16 14 13 33 33 H 1.08996 * 109.47640 * 90.02075 * 22 21 20 34 34 H 1.09003 * 109.46992 * 210.01976 * 22 21 20 35 35 H 1.09000 * 109.47450 * 330.01898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6012 1.9831 -0.8388 5 6 3.5412 1.4446 -0.1311 6 1 4.1502 1.8879 0.6428 7 6 4.1372 0.8808 -1.2391 8 7 3.3956 0.3407 -2.1814 9 14 5.9982 0.8827 -1.4013 10 1 6.5501 -0.3504 -0.7848 11 1 6.3697 0.9267 -2.8384 12 1 6.5540 2.0734 -0.7097 13 7 1.6573 2.0971 1.2583 14 6 1.5589 3.5526 1.0858 15 1 2.2780 3.8789 0.3346 16 6 0.1445 3.9176 0.6305 17 6 1.8566 4.2349 2.3961 18 7 1.3944 3.8997 3.5758 19 7 1.8771 4.7232 4.4411 20 7 2.6349 5.5755 3.8438 21 7 2.6473 5.3082 2.5817 22 6 3.3851 6.0351 1.5457 23 1 -0.3634 0.4936 0.9013 24 1 -0.3634 0.5337 -0.8782 25 1 -0.3633 -1.0275 -0.0232 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8149 -0.0564 -2.9608 29 1 0.7942 1.7162 1.6162 30 1 -0.5685 3.6511 1.4107 31 1 0.0897 4.9893 0.4389 32 1 -0.0953 3.3726 -0.2825 33 1 4.3750 5.5946 1.4277 34 1 2.8440 5.9709 0.6016 35 1 3.4850 7.0808 1.8367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522011109.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:38 Heat of formation + Delta-G solvation = 90.017178 kcal Electronic energy + Delta-G solvation = -17672.471980 eV Core-core repulsion = 14935.332478 eV Total energy + Delta-G solvation = -2737.139502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.10623 -38.80941 -36.57661 -35.57863 -33.73178 -32.41085 -30.20235 -29.18754 -28.02272 -25.65756 -24.67705 -23.94877 -21.98113 -21.44882 -18.42762 -18.29542 -18.11814 -16.84543 -16.74940 -15.93551 -15.44498 -14.88403 -14.55224 -14.51643 -14.21987 -13.82417 -13.70112 -13.40698 -13.13177 -13.09716 -12.85422 -12.70795 -12.52299 -12.39622 -12.04939 -11.94618 -11.77273 -11.60113 -11.46307 -11.12958 -10.85612 -10.41227 -9.08035 -8.05027 -6.16458 0.27944 1.16408 1.27146 1.41389 1.45870 1.52456 2.44542 3.04358 3.21032 3.26946 3.72291 3.96842 4.14369 4.24211 4.33549 4.42106 4.56462 4.57894 4.63055 4.74169 4.77483 4.83255 4.88771 5.11390 5.18675 5.25584 5.32366 5.40216 5.62137 5.76888 5.91134 6.35655 6.47632 6.91078 6.95875 7.52633 7.62859 8.97438 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.008449 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.634493 B = 3313.274219 C = 4133.703351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.232 3.768 4 H -0.004 1.004 5 C -0.511 4.511 6 H 0.044 0.956 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.172 3.828 15 H 0.106 0.894 16 C -0.165 4.165 17 C 0.214 3.786 18 N -0.321 5.321 19 N -0.114 5.114 20 N -0.113 5.113 21 N -0.301 5.301 22 C 0.064 3.936 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.338 0.662 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 9.678 0.590 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.124 3.876 4 H 0.013 0.987 5 C -0.550 4.550 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.213 1.213 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.316 5.316 14 C 0.058 3.942 15 H 0.124 0.876 16 C -0.225 4.225 17 C -0.066 4.066 18 N -0.170 5.170 19 N -0.108 5.108 20 N -0.099 5.099 21 N -0.103 5.103 22 C -0.075 4.075 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.780 9.769 2.060 10.364 hybrid contribution 0.618 -0.286 -1.482 1.631 sum -2.162 9.484 0.577 9.744 Atomic orbital electron populations 1.21766 0.96149 1.01181 1.00707 1.21625 0.94356 0.99192 1.01072 1.18958 0.93818 0.90541 0.84240 0.98691 1.21398 0.92767 1.36980 1.03872 0.93721 1.25522 1.01434 0.95335 0.95694 1.69965 1.35979 1.39440 1.09897 0.85751 0.81721 0.78258 0.76996 1.21302 1.20813 1.19431 1.60277 1.38394 1.00925 1.31987 1.19917 0.98891 0.89357 0.86065 0.87646 1.22396 0.94472 1.03356 1.02280 1.26473 0.92401 0.88800 0.98911 1.74857 1.23491 1.20900 0.97780 1.78494 1.08035 1.00743 1.23544 1.78662 1.18766 1.22105 0.90375 1.48676 1.32170 1.21973 1.07524 1.22898 0.97717 0.98953 0.87935 0.92670 0.93511 0.92820 0.91026 0.95265 0.92996 0.84153 0.91744 0.90104 0.90714 0.87821 0.85489 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.72 71.98 0.70 -4.18 16 2 C -0.12 -5.47 5.36 30.59 0.16 -5.31 16 3 C 0.23 10.40 1.83 44.17 0.08 10.48 16 4 H 0.00 -0.21 7.34 -2.39 -0.02 -0.23 16 5 C -0.51 -26.10 8.56 25.60 0.22 -25.89 16 6 H 0.04 2.36 7.81 -2.92 -0.02 2.34 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -48.67 11.29 21.45 0.24 -48.43 16 9 Si 0.95 41.48 29.54 68.60 2.03 43.50 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.68 -26.63 6.04 -477.14 -2.88 -29.51 16 14 C 0.17 5.52 2.67 44.17 0.12 5.64 16 15 H 0.11 3.38 6.69 -2.39 -0.02 3.36 16 16 C -0.17 -4.23 9.13 71.98 0.66 -3.58 16 17 C 0.21 7.14 6.97 138.14 0.96 8.10 16 18 N -0.32 -12.33 12.36 -50.46 -0.62 -12.95 16 19 N -0.11 -4.40 13.43 37.01 0.50 -3.90 16 20 N -0.11 -3.79 13.29 37.02 0.49 -3.30 16 21 N -0.30 -8.70 3.75 -359.66 -1.35 -10.05 16 22 C 0.06 1.09 11.04 127.77 1.41 2.50 16 23 H 0.05 1.71 6.48 -2.39 -0.02 1.70 16 24 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.07 3.61 5.95 -2.38 -0.01 3.60 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 29 H 0.34 12.45 6.20 -89.69 -0.56 11.89 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.96 7.66 -2.39 -0.02 1.94 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.13 1.61 7.41 -2.39 -0.02 1.60 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.55 292.44 3.70 -59.85 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.54 Total: 15.58 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.76 Total: -10.78 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -3.62 Total: -108.15 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -63.55 3.70 -59.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011109.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.865 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds