Wall clock time and date at job start Sun Mar 29 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 H 1.08998 * 109.46799 * 54.37084 * 3 2 1 5 5 C 1.50693 * 109.47146 * 174.37187 * 3 2 1 6 6 H 1.08001 * 120.00107 * 120.00219 * 5 3 2 7 7 C 1.37878 * 120.00269 * 299.99418 * 5 3 2 8 8 N 1.31516 * 119.99798 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00132 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47055 * 90.00582 * 9 7 5 11 11 H 1.48507 * 109.46911 * 210.00480 * 9 7 5 12 12 H 1.48500 * 109.47157 * 330.00310 * 9 7 5 13 13 N 1.46903 * 109.46814 * 294.37385 * 3 2 1 14 14 C 1.46898 * 111.00078 * 155.69683 * 13 3 2 15 15 H 1.09000 * 109.47086 * 33.73183 * 14 13 3 16 16 C 1.53001 * 109.47206 * 273.73594 * 14 13 3 17 17 C 1.50694 * 109.47200 * 153.72985 * 14 13 3 18 18 N 1.31068 * 126.66025 * 44.68708 * 17 14 13 19 19 N 1.28845 * 107.99351 * 179.89195 * 18 17 14 20 20 N 1.28739 * 109.39379 * 0.38274 * 19 18 17 21 21 N 1.29019 * 108.81250 * 359.76101 * 20 19 18 22 22 C 1.46489 * 126.44191 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47253 * 185.66365 * 1 2 3 24 24 H 1.09002 * 109.47388 * 305.66225 * 1 2 3 25 25 H 1.08998 * 109.46911 * 65.66322 * 1 2 3 26 26 H 1.08998 * 109.47449 * 239.99558 * 2 1 3 27 27 H 1.09007 * 109.46963 * 119.99850 * 2 1 3 28 28 H 0.97004 * 119.99975 * 179.97438 * 8 7 5 29 29 H 1.00893 * 110.99952 * 31.74213 * 13 3 2 30 30 H 1.09003 * 109.46808 * 184.86885 * 16 14 13 31 31 H 1.09004 * 109.46729 * 304.86047 * 16 14 13 32 32 H 1.08988 * 109.47259 * 64.86347 * 16 14 13 33 33 H 1.09000 * 109.47308 * 270.02793 * 22 21 20 34 34 H 1.09003 * 109.47208 * 30.02305 * 22 21 20 35 35 H 1.09003 * 109.47769 * 150.02732 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9845 0.8353 5 6 3.5406 1.4447 0.1393 6 1 4.1539 1.8864 -0.6321 7 6 4.1305 0.8829 1.2517 8 7 3.3837 0.3447 2.1910 9 14 5.9905 0.8863 1.4248 10 1 6.4199 2.1218 2.1278 11 1 6.4170 -0.3019 2.2067 12 1 6.6131 0.8417 0.0773 13 7 1.6644 2.0946 -1.2616 14 6 1.6000 3.5534 -1.1013 15 1 2.3547 3.8737 -0.3831 16 6 0.2122 3.9500 -0.5938 17 6 1.8575 4.2166 -2.4298 18 7 1.3470 3.8742 -3.5874 19 7 1.8065 4.6821 -4.4797 20 7 2.6032 5.5260 -3.9225 21 7 2.6611 5.2719 -2.6589 22 6 3.4530 5.9953 -1.6612 23 1 -0.3633 -1.0226 0.1014 24 1 -0.3634 0.5991 0.8349 25 1 -0.3633 0.4235 -0.9363 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.7987 -0.0509 2.9734 29 1 0.7907 1.7303 -1.6108 30 1 0.1356 5.0367 -0.5572 31 1 -0.5478 3.5547 -1.2678 32 1 0.0601 3.5411 0.4050 33 1 4.4388 5.5377 -1.5785 34 1 3.5601 7.0360 -1.9673 35 1 2.9495 5.9505 -0.6955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522011110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:40 Heat of formation + Delta-G solvation = 89.675067 kcal Electronic energy + Delta-G solvation = -17668.570455 eV Core-core repulsion = 14931.416118 eV Total energy + Delta-G solvation = -2737.154337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.10828 -38.80397 -36.57853 -35.57766 -33.72631 -32.42030 -30.19105 -29.18598 -28.02682 -25.66752 -24.67411 -23.94478 -21.97930 -21.44760 -18.41816 -18.29696 -18.12366 -16.85129 -16.75625 -15.93845 -15.40495 -14.88878 -14.54756 -14.50178 -14.21945 -13.82971 -13.71605 -13.40202 -13.13364 -13.09798 -12.82877 -12.69727 -12.56279 -12.40412 -12.05393 -11.94855 -11.77358 -11.60900 -11.45271 -11.11866 -10.85218 -10.41083 -9.07632 -8.04809 -6.16273 0.27644 1.15910 1.27082 1.41014 1.46168 1.53883 2.44918 3.04228 3.21394 3.26857 3.72468 3.96569 4.14701 4.24510 4.33515 4.41631 4.56621 4.58096 4.63265 4.74301 4.76719 4.83221 4.88956 5.11547 5.19318 5.26328 5.32755 5.40622 5.62648 5.77171 5.90795 6.35820 6.47181 6.90984 6.96153 7.52812 7.62574 8.97736 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.008406 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.553932 B = 3330.277583 C = 4148.766505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.005 1.005 5 C -0.512 4.512 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.280 1.280 13 N -0.682 5.682 14 C 0.172 3.828 15 H 0.107 0.893 16 C -0.165 4.165 17 C 0.213 3.787 18 N -0.321 5.321 19 N -0.114 5.114 20 N -0.112 5.112 21 N -0.301 5.301 22 C 0.064 3.936 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.261 0.739 29 H 0.338 0.662 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 9.707 -0.771 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.124 3.876 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.315 5.315 14 C 0.058 3.942 15 H 0.125 0.875 16 C -0.225 4.225 17 C -0.066 4.066 18 N -0.170 5.170 19 N -0.108 5.108 20 N -0.099 5.099 21 N -0.103 5.103 22 C -0.075 4.075 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.158 0.842 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.395 9.760 -2.243 10.296 hybrid contribution 0.626 -0.241 1.489 1.634 sum -1.768 9.518 -0.754 9.711 Atomic orbital electron populations 1.21760 0.96184 1.01140 1.00699 1.21615 0.94330 0.99188 1.01055 1.18958 0.93877 0.90547 0.84169 0.98757 1.21398 0.92760 1.37119 1.03791 0.93649 1.25530 1.01451 0.95296 0.95733 1.69969 1.35983 1.39523 1.09813 0.85744 0.81631 0.77742 0.77574 1.19556 1.21384 1.20548 1.60298 1.37728 1.01278 1.32231 1.19911 0.99352 0.89411 0.85532 0.87539 1.22393 0.94870 1.02981 1.02212 1.26466 0.91949 0.89058 0.99154 1.74860 1.23929 1.20864 0.97393 1.78497 1.07862 1.01147 1.23298 1.78660 1.18082 1.22026 0.91104 1.48678 1.31261 1.22882 1.07498 1.22906 0.96264 0.99018 0.89356 0.92880 0.93524 0.92683 0.95247 0.91033 0.93003 0.84223 0.90394 0.91713 0.90678 0.87702 0.84981 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.64 71.98 0.69 -4.21 16 2 C -0.12 -5.46 5.37 30.59 0.16 -5.29 16 3 C 0.23 10.41 1.85 44.17 0.08 10.49 16 4 H -0.01 -0.24 7.25 -2.39 -0.02 -0.26 16 5 C -0.51 -26.06 8.46 25.60 0.22 -25.84 16 6 H 0.05 2.39 7.81 -2.91 -0.02 2.36 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -48.64 11.29 21.45 0.24 -48.40 16 9 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.68 -26.64 6.03 -477.17 -2.88 -29.52 16 14 C 0.17 5.54 2.68 44.17 0.12 5.65 16 15 H 0.11 3.42 6.65 -2.39 -0.02 3.40 16 16 C -0.16 -4.27 9.15 71.98 0.66 -3.61 16 17 C 0.21 7.10 6.97 138.13 0.96 8.06 16 18 N -0.32 -12.30 12.36 -50.45 -0.62 -12.92 16 19 N -0.11 -4.38 13.43 37.01 0.50 -3.88 16 20 N -0.11 -3.76 13.29 37.02 0.49 -3.27 16 21 N -0.30 -8.65 3.75 -359.66 -1.35 -9.99 16 22 C 0.06 1.07 11.04 127.77 1.41 2.48 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.72 6.65 -2.39 -0.02 1.71 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 3.62 5.94 -2.38 -0.01 3.60 16 28 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 29 H 0.34 12.48 6.26 -89.70 -0.56 11.91 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.69 8.04 -2.38 -0.02 1.67 16 32 H 0.07 1.98 7.57 -2.39 -0.02 1.96 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.13 1.60 7.41 -2.39 -0.02 1.59 16 Total: -1.00 -63.41 292.20 3.70 -59.72 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.53 Total: 15.76 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.76 Total: -10.84 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -3.62 Total: -107.99 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -63.41 3.70 -59.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.393 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds