Wall clock time and date at job start Sun Mar 29 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46588 * 2 1 4 4 H 1.09006 * 109.46580 * 179.59380 * 3 2 1 5 5 C 1.50697 * 109.47449 * 299.59029 * 3 2 1 6 6 H 1.08000 * 119.99796 * 120.00025 * 5 3 2 7 7 C 1.37875 * 120.00204 * 300.00973 * 5 3 2 8 8 N 1.31518 * 119.99999 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00103 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47390 * 59.99256 * 9 7 5 11 11 H 1.48497 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46919 * 299.99521 * 9 7 5 13 13 N 1.46893 * 109.47255 * 59.59752 * 3 2 1 14 14 C 1.46904 * 111.00449 * 85.72656 * 13 3 2 15 15 H 1.08996 * 109.47083 * 326.98374 * 14 13 3 16 16 C 1.53002 * 109.46585 * 86.97699 * 14 13 3 17 17 C 1.50696 * 109.47450 * 206.97744 * 14 13 3 18 18 N 1.31074 * 126.66116 * 315.02502 * 17 14 13 19 19 N 1.28839 * 107.98908 * 179.97438 * 18 17 14 20 20 N 1.28738 * 109.39782 * 0.02562 * 19 18 17 21 21 N 1.29014 * 108.80780 * 359.74426 * 20 19 18 22 22 C 1.46507 * 126.43569 * 180.24835 * 21 20 19 23 23 H 1.08997 * 109.47435 * 296.31037 * 1 2 3 24 24 H 1.09003 * 109.47432 * 56.31241 * 1 2 3 25 25 H 1.09005 * 109.47026 * 176.30689 * 1 2 3 26 26 H 1.09002 * 109.47323 * 119.99763 * 2 1 3 27 27 H 1.09002 * 109.47365 * 240.00249 * 2 1 3 28 28 H 0.96996 * 119.99633 * 180.02562 * 8 7 5 29 29 H 1.00904 * 111.00031 * 209.68434 * 13 3 2 30 30 H 1.08994 * 109.47322 * 60.00781 * 16 14 13 31 31 H 1.09009 * 109.46922 * 180.02562 * 16 14 13 32 32 H 1.09000 * 109.47168 * 299.99845 * 16 14 13 33 33 H 1.08999 * 109.46654 * 270.17807 * 22 21 20 34 34 H 1.08997 * 109.47526 * 30.17696 * 22 21 20 35 35 H 1.09001 * 109.46978 * 150.18142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0073 5 6 1.5458 2.1501 -1.2355 6 1 0.9242 3.0284 -1.1426 7 6 1.8872 1.6761 -2.4843 8 7 2.6445 0.6067 -2.5974 9 14 1.2742 2.5526 -4.0158 10 1 1.7686 3.9529 -4.0160 11 1 1.7778 1.8501 -5.2232 12 1 -0.2108 2.5520 -4.0254 13 7 1.5423 2.1379 1.1945 14 6 2.4277 1.9089 2.3441 15 1 2.8605 0.9109 2.2763 16 6 3.5473 2.9517 2.3411 17 6 1.6348 2.0269 3.6202 18 7 0.7615 2.9586 3.9157 19 7 0.2999 2.7124 5.0931 20 7 0.8566 1.6482 5.5566 21 7 1.6822 1.1932 4.6758 22 6 2.5167 -0.0043 4.8021 23 1 -0.3634 0.4555 0.9212 24 1 -0.3634 0.5700 -0.8551 25 1 -0.3633 -1.0256 -0.0662 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.8849 0.2735 -3.4761 29 1 1.4277 3.1246 1.0171 30 1 3.1145 3.9497 2.4090 31 1 4.2046 2.7815 3.1939 32 1 4.1208 2.8663 1.4181 33 1 3.4741 0.2656 5.2478 34 1 2.0129 -0.7331 5.4370 35 1 2.6842 -0.4361 3.8154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522011111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:42 Heat of formation + Delta-G solvation = 111.244617 kcal Electronic energy + Delta-G solvation = -17674.285344 eV Core-core repulsion = 14938.066333 eV Total energy + Delta-G solvation = -2736.219011 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.84963 -37.24583 -35.41831 -34.04880 -31.78349 -30.87511 -28.74216 -28.20813 -25.99740 -24.26639 -23.41474 -22.75917 -20.94405 -19.02821 -17.48343 -16.97633 -16.53295 -15.13635 -14.94804 -14.26325 -13.99261 -13.71339 -13.52527 -13.11492 -12.83304 -12.50473 -12.13572 -11.97944 -11.89547 -11.70447 -11.18697 -10.96660 -10.84948 -10.72622 -10.62136 -10.45151 -10.24241 -9.93263 -9.65778 -9.52440 -8.92780 -8.56100 -7.47829 -6.11306 -4.16541 1.50782 2.19171 2.59816 3.27711 3.32323 3.36062 4.21792 4.36299 4.38701 4.77842 4.80652 5.09265 5.18462 5.22488 5.37645 5.45654 5.66289 5.93239 5.97042 6.03555 6.28648 6.37485 6.43574 6.54094 6.73959 7.08918 7.11593 7.34428 7.62621 7.66221 7.72621 8.12055 8.21615 8.48925 8.90741 8.92949 9.48893 10.94755 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.006395 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.615283 B = 4377.066756 C = 4481.956374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.007 0.993 5 C -0.514 4.514 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.670 5.670 14 C 0.164 3.836 15 H 0.094 0.906 16 C -0.172 4.172 17 C 0.217 3.783 18 N -0.292 5.292 19 N -0.084 5.084 20 N -0.114 5.114 21 N -0.315 5.315 22 C 0.080 3.920 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.013 0.987 26 H 0.005 0.995 27 H 0.090 0.910 28 H 0.262 0.738 29 H 0.347 0.653 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -2.322 9.853 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.553 4.553 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.303 5.303 14 C 0.049 3.951 15 H 0.112 0.888 16 C -0.232 4.232 17 C -0.062 4.062 18 N -0.141 5.141 19 N -0.079 5.079 20 N -0.099 5.099 21 N -0.117 5.117 22 C -0.062 4.062 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.024 0.976 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.166 0.834 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.597 -2.321 10.715 11.267 hybrid contribution 1.084 0.232 -1.497 1.862 sum 3.680 -2.089 9.218 10.143 Atomic orbital electron populations 1.21455 0.97381 0.97481 1.01520 1.21495 0.95183 0.98196 0.99348 1.19203 0.93172 0.91290 0.85149 0.97559 1.21107 1.31937 1.12195 0.90052 0.92041 1.24852 0.94896 0.94950 0.98939 1.69852 1.36425 1.22634 1.23910 0.86606 0.79343 0.79666 0.82117 1.20264 1.21354 1.20145 1.60534 1.47348 1.17536 1.04866 1.19927 0.89484 1.00285 0.85395 0.88772 1.22463 0.98344 0.99724 1.02711 1.26500 0.98299 0.88025 0.93363 1.74989 1.09651 1.22212 1.07241 1.78550 1.18390 1.07142 1.03774 1.78765 1.04668 1.09777 1.16728 1.48346 1.29579 1.21902 1.11856 1.22342 0.94228 0.83551 1.06077 0.94153 0.92243 0.96740 0.97624 0.89139 0.92803 0.83357 0.91442 0.93043 0.90248 0.88782 0.87803 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.27 16 2 C -0.10 -2.30 5.57 -26.73 -0.15 -2.45 16 3 C 0.22 4.90 2.11 -68.87 -0.15 4.76 16 4 H 0.01 0.16 7.26 -51.93 -0.38 -0.22 16 5 C -0.51 -12.96 7.29 -34.44 -0.25 -13.21 16 6 H 0.06 1.56 7.61 -52.49 -0.40 1.16 16 7 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -13.06 5.33 -102.17 -0.54 -13.60 16 14 C 0.16 2.60 2.77 -68.86 -0.19 2.41 16 15 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 16 C -0.17 -2.41 9.13 37.16 0.34 -2.07 16 17 C 0.22 3.57 6.97 -155.44 -1.08 2.48 16 18 N -0.29 -5.55 12.36 32.70 0.40 -5.15 16 19 N -0.08 -1.60 13.43 60.35 0.81 -0.79 16 20 N -0.11 -1.89 13.29 60.35 0.80 -1.09 16 21 N -0.32 -4.48 3.75 -65.02 -0.24 -4.72 16 22 C 0.08 0.67 11.21 59.85 0.67 1.34 16 23 H 0.04 0.87 7.71 -51.93 -0.40 0.46 16 24 H 0.06 1.40 7.10 -51.93 -0.37 1.03 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.01 0.10 7.51 -51.93 -0.39 -0.29 16 27 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.35 6.92 7.91 -39.29 -0.31 6.61 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.80 7.00 -51.93 -0.36 0.43 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -29.41 290.84 -4.20 -33.62 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.87 Total: 2.41 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.55 Total: -7.42 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 1.86 Total: -48.38 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.41 -4.20 -33.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.860 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds