Wall clock time and date at job start Sun Mar 29 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46588 * 2 1 4 4 H 1.09006 * 109.46580 * 179.59380 * 3 2 1 5 5 C 1.50697 * 109.47449 * 299.59029 * 3 2 1 6 6 H 1.08000 * 119.99796 * 120.00025 * 5 3 2 7 7 C 1.37875 * 120.00204 * 300.00973 * 5 3 2 8 8 N 1.31518 * 119.99999 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00103 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47390 * 59.99256 * 9 7 5 11 11 H 1.48497 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46919 * 299.99521 * 9 7 5 13 13 N 1.46893 * 109.47255 * 59.59752 * 3 2 1 14 14 C 1.46904 * 111.00449 * 85.72656 * 13 3 2 15 15 H 1.08996 * 109.47083 * 326.98374 * 14 13 3 16 16 C 1.53002 * 109.46585 * 86.97699 * 14 13 3 17 17 C 1.50696 * 109.47450 * 206.97744 * 14 13 3 18 18 N 1.31074 * 126.66116 * 315.02502 * 17 14 13 19 19 N 1.28839 * 107.98908 * 179.97438 * 18 17 14 20 20 N 1.28738 * 109.39782 * 0.02562 * 19 18 17 21 21 N 1.29014 * 108.80780 * 359.74426 * 20 19 18 22 22 C 1.46507 * 126.43569 * 180.24835 * 21 20 19 23 23 H 1.08997 * 109.47435 * 296.31037 * 1 2 3 24 24 H 1.09003 * 109.47432 * 56.31241 * 1 2 3 25 25 H 1.09005 * 109.47026 * 176.30689 * 1 2 3 26 26 H 1.09002 * 109.47323 * 119.99763 * 2 1 3 27 27 H 1.09002 * 109.47365 * 240.00249 * 2 1 3 28 28 H 0.96996 * 119.99633 * 180.02562 * 8 7 5 29 29 H 1.00904 * 111.00031 * 209.68434 * 13 3 2 30 30 H 1.08994 * 109.47322 * 60.00781 * 16 14 13 31 31 H 1.09009 * 109.46922 * 180.02562 * 16 14 13 32 32 H 1.09000 * 109.47168 * 299.99845 * 16 14 13 33 33 H 1.08999 * 109.46654 * 270.17807 * 22 21 20 34 34 H 1.08997 * 109.47526 * 30.17696 * 22 21 20 35 35 H 1.09001 * 109.46978 * 150.18142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0073 5 6 1.5458 2.1501 -1.2355 6 1 0.9242 3.0284 -1.1426 7 6 1.8872 1.6761 -2.4843 8 7 2.6445 0.6067 -2.5974 9 14 1.2742 2.5526 -4.0158 10 1 1.7686 3.9529 -4.0160 11 1 1.7778 1.8501 -5.2232 12 1 -0.2108 2.5520 -4.0254 13 7 1.5423 2.1379 1.1945 14 6 2.4277 1.9089 2.3441 15 1 2.8605 0.9109 2.2763 16 6 3.5473 2.9517 2.3411 17 6 1.6348 2.0269 3.6202 18 7 0.7615 2.9586 3.9157 19 7 0.2999 2.7124 5.0931 20 7 0.8566 1.6482 5.5566 21 7 1.6822 1.1932 4.6758 22 6 2.5167 -0.0043 4.8021 23 1 -0.3634 0.4555 0.9212 24 1 -0.3634 0.5700 -0.8551 25 1 -0.3633 -1.0256 -0.0662 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.8849 0.2735 -3.4761 29 1 1.4277 3.1246 1.0171 30 1 3.1145 3.9497 2.4090 31 1 4.2046 2.7815 3.1939 32 1 4.1208 2.8663 1.4181 33 1 3.4741 0.2656 5.2478 34 1 2.0129 -0.7331 5.4370 35 1 2.6842 -0.4361 3.8154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522011111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:42 Heat of formation + Delta-G solvation = 90.906419 kcal Electronic energy + Delta-G solvation = -17675.167275 eV Core-core repulsion = 14938.066333 eV Total energy + Delta-G solvation = -2737.100941 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.10656 -38.77478 -36.57327 -35.66195 -33.47758 -32.39975 -30.18355 -29.16656 -27.74975 -25.60400 -25.13760 -24.01865 -22.28736 -20.72291 -18.80741 -18.14958 -18.08568 -16.90775 -16.41540 -15.81709 -15.41763 -14.83161 -14.73179 -14.51232 -14.08164 -13.90167 -13.65175 -13.54623 -13.13593 -13.09497 -12.79605 -12.56951 -12.49390 -12.30393 -12.04709 -11.92959 -11.74216 -11.66238 -11.33646 -10.98430 -10.77947 -10.49806 -9.05922 -8.07613 -6.16921 0.28470 1.16842 1.27321 1.45184 1.47271 1.53235 2.45547 3.03658 3.21454 3.28650 3.71680 3.86451 4.14812 4.26939 4.33385 4.40664 4.58862 4.63090 4.75204 4.78010 4.81965 4.85676 4.96904 5.17735 5.27415 5.31750 5.40648 5.56664 5.74696 5.83048 5.89230 6.31796 6.47729 6.75359 7.01624 7.51165 7.63959 8.96925 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.006395 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.615283 B = 4377.066756 C = 4481.956374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.229 3.771 4 H -0.009 1.009 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.168 3.832 15 H 0.111 0.889 16 C -0.165 4.165 17 C 0.213 3.787 18 N -0.322 5.322 19 N -0.116 5.116 20 N -0.111 5.111 21 N -0.300 5.300 22 C 0.062 3.938 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -3.114 10.719 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C 0.121 3.879 4 H 0.009 0.991 5 C -0.563 4.563 6 H 0.070 0.930 7 C -0.174 4.174 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.308 5.308 14 C 0.053 3.947 15 H 0.129 0.871 16 C -0.224 4.224 17 C -0.067 4.067 18 N -0.171 5.171 19 N -0.110 5.110 20 N -0.098 5.098 21 N -0.102 5.102 22 C -0.077 4.077 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.344 -3.124 11.600 12.470 hybrid contribution 0.893 0.413 -1.688 1.954 sum 4.236 -2.711 9.911 11.114 Atomic orbital electron populations 1.21314 0.97027 0.98088 1.00240 1.21383 0.95353 0.97895 0.99237 1.18942 0.92008 0.91508 0.85434 0.99111 1.21390 1.31442 1.12021 0.91471 0.92972 1.25428 0.95244 0.95577 1.01134 1.69949 1.37329 1.23519 1.24181 0.85825 0.78549 0.78909 0.79599 1.19895 1.21152 1.20440 1.60389 1.48604 1.16936 1.04846 1.19994 0.89223 1.01750 0.83688 0.87085 1.22361 0.97921 0.98626 1.03531 1.26383 0.98153 0.88210 0.93918 1.74901 1.10812 1.23744 1.07665 1.78527 1.19807 1.08461 1.04175 1.78670 1.04720 1.09273 1.17106 1.48711 1.28724 1.22318 1.10476 1.22953 0.95014 0.82009 1.07716 0.94160 0.94811 0.94989 0.95086 0.91785 0.92968 0.83968 0.92282 0.90178 0.91052 0.85632 0.85818 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.10 -4.33 5.57 30.60 0.17 -4.16 16 3 C 0.23 10.13 2.11 44.17 0.09 10.22 16 4 H -0.01 -0.41 7.26 -2.38 -0.02 -0.42 16 5 C -0.52 -26.50 7.29 25.60 0.19 -26.31 16 6 H 0.05 2.68 7.61 -2.91 -0.02 2.65 16 7 C 0.03 1.34 5.30 84.65 0.45 1.79 16 8 N -0.91 -48.43 11.32 21.45 0.24 -48.19 16 9 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.68 -25.79 5.33 -477.16 -2.54 -28.33 16 14 C 0.17 4.99 2.77 44.17 0.12 5.11 16 15 H 0.11 2.92 5.88 -2.39 -0.01 2.91 16 16 C -0.16 -4.30 9.13 71.98 0.66 -3.65 16 17 C 0.21 6.59 6.97 138.13 0.96 7.56 16 18 N -0.32 -12.00 12.36 -50.46 -0.62 -12.63 16 19 N -0.12 -4.31 13.43 37.01 0.50 -3.81 16 20 N -0.11 -3.50 13.29 37.02 0.49 -3.01 16 21 N -0.30 -7.73 3.75 -359.64 -1.35 -9.07 16 22 C 0.06 0.80 11.21 127.77 1.43 2.23 16 23 H 0.04 1.67 7.71 -2.39 -0.02 1.66 16 24 H 0.03 1.57 7.10 -2.39 -0.02 1.55 16 25 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.03 1.15 7.51 -2.39 -0.02 1.14 16 27 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 28 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 29 H 0.34 13.63 7.91 -89.69 -0.71 12.92 16 30 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 33 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 1.29 7.00 -2.39 -0.02 1.27 16 Total: -1.00 -62.99 290.84 3.89 -59.10 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.39 Total: 13.21 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.76 Total: -11.15 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -3.28 Total: -105.05 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -62.99 3.89 -59.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.003 kcal (2) G-P(sol) polarization free energy of solvation -62.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds