Wall clock time and date at job start Sun Mar 29 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 120.00309 * 2 1 4 4 H 1.08004 * 120.00124 * 198.24992 * 3 2 1 5 5 C 1.38957 * 119.99788 * 18.24564 * 3 2 1 6 6 N 1.31402 * 120.00003 * 17.40204 * 5 3 2 7 7 Si 1.86800 * 119.99845 * 197.39517 * 5 3 2 8 8 H 1.48500 * 109.47204 * 60.00264 * 7 5 3 9 9 H 1.48496 * 109.47082 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47154 * 300.00328 * 7 5 3 11 11 C 1.34780 * 119.99812 * 179.71878 * 2 1 3 12 12 O 1.21288 * 119.99827 * 180.02562 * 11 2 1 13 13 C 1.50696 * 120.00018 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.55601 * 34.66395 * 13 11 2 15 15 C 1.53064 * 117.50717 * 180.37244 * 13 11 2 16 16 C 1.52695 * 59.93046 * 107.47028 * 15 13 11 17 17 C 1.53252 * 117.88312 * 107.77551 * 16 15 13 18 18 C 1.53326 * 108.49060 * 196.24398 * 17 16 15 19 19 O 1.42871 * 109.32513 * 306.04505 * 18 17 16 20 20 C 1.42862 * 114.53380 * 64.35140 * 19 18 17 21 21 C 1.53255 * 117.87898 * 252.22542 * 16 15 13 22 22 H 1.09005 * 109.47083 * 268.58127 * 1 2 3 23 23 H 1.09004 * 109.46670 * 28.57635 * 1 2 3 24 24 H 1.08994 * 109.47562 * 148.57989 * 1 2 3 25 25 H 0.97001 * 119.99879 * 179.97438 * 6 5 3 26 26 H 1.08999 * 117.50686 * 214.93748 * 15 13 11 27 27 H 1.08996 * 117.50856 * 359.96477 * 15 13 11 28 28 H 1.08995 * 109.63131 * 315.94590 * 17 16 15 29 29 H 1.08999 * 109.63034 * 76.54974 * 17 16 15 30 30 H 1.09001 * 109.49641 * 186.08364 * 18 17 16 31 31 H 1.09002 * 109.49490 * 65.99398 * 18 17 16 32 32 H 1.08994 * 109.49754 * 175.68638 * 20 19 18 33 33 H 1.09007 * 109.49128 * 55.59851 * 20 19 18 34 34 H 1.09001 * 109.63439 * 283.45458 * 21 16 15 35 35 H 1.09006 * 109.63420 * 44.05221 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1898 1.2107 -0.2929 5 6 1.5082 2.3604 0.3768 6 7 0.3799 2.3052 1.0481 7 14 2.2486 4.0159 -0.0710 8 1 2.3589 4.1257 -1.5478 9 1 1.3775 5.1031 0.4430 10 1 3.5985 4.1349 0.5364 11 6 2.1388 -1.1672 0.0057 12 8 3.3517 -1.1672 0.0062 13 6 1.3853 -2.4723 0.0116 14 1 0.4499 -2.4777 -0.5481 15 6 2.2075 -3.7633 0.0267 16 6 1.4544 -3.3211 1.2793 17 6 0.2039 -4.1113 1.6801 18 6 -0.5987 -3.2751 2.6839 19 8 0.2494 -2.8979 3.7700 20 6 1.3308 -2.0378 3.4072 21 6 2.2750 -2.7832 2.4565 22 1 -0.3633 -0.0254 1.0274 23 1 -0.3633 0.9025 -0.4916 24 1 -0.3634 -0.8769 -0.5357 25 1 -0.0683 3.1242 1.3115 26 1 1.8128 -4.6180 -0.5225 27 1 3.2933 -3.6686 0.0319 28 1 -0.4044 -4.3067 0.7970 29 1 0.4986 -5.0538 2.1415 30 1 -1.4342 -3.8642 3.0622 31 1 -0.9779 -2.3800 2.1907 32 1 1.8762 -1.7413 4.3031 33 1 0.9388 -1.1509 2.9092 34 1 2.7461 -3.6127 2.9839 35 1 3.0391 -2.0986 2.0879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530667786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:18 Heat of formation + Delta-G solvation = -52.551495 kcal Electronic energy + Delta-G solvation = -18200.956321 eV Core-core repulsion = 15393.049075 eV Total energy + Delta-G solvation = -2807.907246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88102 -37.96514 -35.93788 -34.49504 -31.59651 -30.90704 -29.72529 -26.53197 -25.00672 -23.43106 -23.06284 -22.15028 -19.34383 -17.86769 -16.87311 -16.31520 -15.79604 -15.67382 -14.74495 -14.57727 -14.18965 -14.10095 -13.40357 -13.12376 -12.94905 -12.48899 -12.02647 -11.72980 -11.64113 -11.34903 -11.22280 -11.00779 -10.86890 -10.52276 -10.42116 -10.36483 -10.22739 -9.94081 -9.51840 -9.00806 -8.88790 -8.35724 -7.71939 -6.35165 -3.84676 3.15844 3.23617 3.27547 3.59926 4.09786 4.18813 4.36368 4.70980 5.01713 5.05892 5.16398 5.29714 5.32100 5.42287 5.55625 5.76433 5.80403 5.83331 5.95686 6.02247 6.07790 6.14162 6.17733 6.36986 6.44113 6.52342 6.55604 6.69995 6.86249 7.18691 7.54551 7.55631 8.11254 8.48164 9.18153 9.43196 10.00684 10.69110 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.008245 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.144230 B = 3395.025718 C = 3744.239395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.440 5.440 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.878 5.878 7 Si 0.923 3.077 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.473 3.527 12 O -0.591 6.591 13 C -0.162 4.162 14 H 0.109 0.891 15 C -0.147 4.147 16 C -0.105 4.105 17 C -0.114 4.114 18 C 0.063 3.937 19 O -0.389 6.389 20 C 0.064 3.936 21 C -0.121 4.121 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -8.975 1.139 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.157 5.157 3 C -0.436 4.436 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.517 5.517 7 Si 0.750 3.250 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.262 3.738 12 O -0.477 6.477 13 C -0.184 4.184 14 H 0.126 0.874 15 C -0.184 4.184 16 C -0.106 4.106 17 C -0.152 4.152 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.578 -8.838 1.405 9.638 hybrid contribution 0.085 1.009 -0.560 1.157 sum -3.493 -7.829 0.845 8.614 Atomic orbital electron populations 1.21500 0.81242 0.99380 1.00889 1.43522 1.05442 1.04663 1.62103 1.19633 0.97581 0.83038 1.43370 0.88255 1.25269 0.96573 0.99855 0.95524 1.70032 1.17994 1.28964 1.34680 0.86041 0.78946 0.80959 0.79041 1.19959 1.20955 1.19802 1.19019 0.87315 0.83742 0.83749 1.90488 1.13854 1.86930 1.56423 1.22407 1.01506 0.92371 1.02088 0.87357 1.22925 0.99850 0.96146 0.99513 1.21318 0.98301 1.01377 0.89606 1.21806 0.95252 0.98562 0.99556 1.22544 0.92316 0.98181 0.88310 1.87780 1.41371 1.68087 1.33507 1.22609 0.87498 0.92425 0.98718 1.21849 0.98452 1.00702 0.94876 0.93082 0.90785 0.95617 0.92179 0.89045 0.87781 0.91028 0.90843 0.89376 0.92828 0.89260 0.91974 0.91443 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.55 8.52 59.85 0.51 3.06 16 2 N -0.44 -11.23 3.02 -122.19 -0.37 -11.60 16 3 C -0.31 -8.57 9.34 -14.93 -0.14 -8.71 16 4 H 0.10 2.90 7.37 -52.48 -0.39 2.52 16 5 C 0.03 0.82 4.98 -17.47 -0.09 0.73 16 6 N -0.88 -23.11 10.73 55.50 0.60 -22.51 16 7 Si 0.92 20.67 29.59 -169.99 -5.03 15.64 16 8 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.47 11.51 6.27 -10.99 -0.07 11.44 16 12 O -0.59 -16.23 14.80 5.55 0.08 -16.15 16 13 C -0.16 -3.07 4.98 -91.89 -0.46 -3.53 16 14 H 0.11 1.86 6.47 -51.93 -0.34 1.52 16 15 C -0.15 -2.43 9.52 -26.85 -0.26 -2.68 16 16 C -0.11 -1.75 2.03 -154.55 -0.31 -2.07 16 17 C -0.11 -1.55 5.92 -26.43 -0.16 -1.71 16 18 C 0.06 0.91 6.85 37.33 0.26 1.16 16 19 O -0.39 -6.59 10.69 -35.23 -0.38 -6.96 16 20 C 0.06 1.14 6.85 37.33 0.26 1.40 16 21 C -0.12 -2.18 5.58 -26.43 -0.15 -2.32 16 22 H 0.05 1.17 7.81 -51.93 -0.41 0.77 16 23 H 0.07 1.75 6.68 -51.93 -0.35 1.40 16 24 H 0.03 0.48 6.07 -51.93 -0.32 0.17 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.89 7.67 -51.93 -0.40 1.49 16 28 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.98 6.06 -51.93 -0.31 1.67 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -30.11 282.49 -6.46 -36.57 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.02 Total: 3.99 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.60 Total: -3.23 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.23 Total: -34.12 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.29 Total: -23.11 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.11 -6.46 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530667786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.982 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds