Wall clock time and date at job start Sun Mar 29 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 120.00309 * 2 1 4 4 H 1.08004 * 120.00124 * 198.24992 * 3 2 1 5 5 C 1.38957 * 119.99788 * 18.24564 * 3 2 1 6 6 N 1.31402 * 120.00003 * 17.40204 * 5 3 2 7 7 Si 1.86800 * 119.99845 * 197.39517 * 5 3 2 8 8 H 1.48500 * 109.47204 * 60.00264 * 7 5 3 9 9 H 1.48496 * 109.47082 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47154 * 300.00328 * 7 5 3 11 11 C 1.34780 * 119.99812 * 179.71878 * 2 1 3 12 12 O 1.21288 * 119.99827 * 180.02562 * 11 2 1 13 13 C 1.50696 * 120.00018 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.55601 * 34.66395 * 13 11 2 15 15 C 1.53064 * 117.50717 * 180.37244 * 13 11 2 16 16 C 1.52695 * 59.93046 * 107.47028 * 15 13 11 17 17 C 1.53252 * 117.88312 * 107.77551 * 16 15 13 18 18 C 1.53326 * 108.49060 * 196.24398 * 17 16 15 19 19 O 1.42871 * 109.32513 * 306.04505 * 18 17 16 20 20 C 1.42862 * 114.53380 * 64.35140 * 19 18 17 21 21 C 1.53255 * 117.87898 * 252.22542 * 16 15 13 22 22 H 1.09005 * 109.47083 * 268.58127 * 1 2 3 23 23 H 1.09004 * 109.46670 * 28.57635 * 1 2 3 24 24 H 1.08994 * 109.47562 * 148.57989 * 1 2 3 25 25 H 0.97001 * 119.99879 * 179.97438 * 6 5 3 26 26 H 1.08999 * 117.50686 * 214.93748 * 15 13 11 27 27 H 1.08996 * 117.50856 * 359.96477 * 15 13 11 28 28 H 1.08995 * 109.63131 * 315.94590 * 17 16 15 29 29 H 1.08999 * 109.63034 * 76.54974 * 17 16 15 30 30 H 1.09001 * 109.49641 * 186.08364 * 18 17 16 31 31 H 1.09002 * 109.49490 * 65.99398 * 18 17 16 32 32 H 1.08994 * 109.49754 * 175.68638 * 20 19 18 33 33 H 1.09007 * 109.49128 * 55.59851 * 20 19 18 34 34 H 1.09001 * 109.63439 * 283.45458 * 21 16 15 35 35 H 1.09006 * 109.63420 * 44.05221 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1898 1.2107 -0.2929 5 6 1.5082 2.3604 0.3768 6 7 0.3799 2.3052 1.0481 7 14 2.2486 4.0159 -0.0710 8 1 2.3589 4.1257 -1.5478 9 1 1.3775 5.1031 0.4430 10 1 3.5985 4.1349 0.5364 11 6 2.1388 -1.1672 0.0057 12 8 3.3517 -1.1672 0.0062 13 6 1.3853 -2.4723 0.0116 14 1 0.4499 -2.4777 -0.5481 15 6 2.2075 -3.7633 0.0267 16 6 1.4544 -3.3211 1.2793 17 6 0.2039 -4.1113 1.6801 18 6 -0.5987 -3.2751 2.6839 19 8 0.2494 -2.8979 3.7700 20 6 1.3308 -2.0378 3.4072 21 6 2.2750 -2.7832 2.4565 22 1 -0.3633 -0.0254 1.0274 23 1 -0.3633 0.9025 -0.4916 24 1 -0.3634 -0.8769 -0.5357 25 1 -0.0683 3.1242 1.3115 26 1 1.8128 -4.6180 -0.5225 27 1 3.2933 -3.6686 0.0319 28 1 -0.4044 -4.3067 0.7970 29 1 0.4986 -5.0538 2.1415 30 1 -1.4342 -3.8642 3.0622 31 1 -0.9779 -2.3800 2.1907 32 1 1.8762 -1.7413 4.3031 33 1 0.9388 -1.1509 2.9092 34 1 2.7461 -3.6127 2.9839 35 1 3.0391 -2.0986 2.0879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530667786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:17 Heat of formation + Delta-G solvation = -71.930362 kcal Electronic energy + Delta-G solvation = -18201.796652 eV Core-core repulsion = 15393.049075 eV Total energy + Delta-G solvation = -2808.747576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39280 -39.60797 -37.46648 -36.42656 -33.62598 -32.17053 -31.07236 -28.45615 -26.84938 -24.73814 -24.65649 -23.54101 -20.86885 -19.47314 -18.86546 -18.08157 -17.15296 -16.98650 -16.61855 -16.11795 -15.78486 -15.76315 -15.03665 -14.68654 -14.30159 -13.89881 -13.67654 -13.47717 -13.24949 -13.16879 -12.83603 -12.65359 -12.36394 -12.25731 -12.16649 -11.89628 -11.64376 -11.30195 -11.05124 -10.86601 -10.34066 -10.15570 -9.72705 -8.36863 -5.95359 1.35027 1.38735 1.49038 1.88224 2.25120 2.79320 2.92735 3.02301 3.16020 3.66074 3.82691 3.90459 3.92571 4.09571 4.18455 4.27466 4.46013 4.54212 4.69484 4.72425 4.75997 4.82018 4.86441 4.94876 4.99881 5.12755 5.14342 5.22772 5.33512 5.36783 5.43647 6.06847 6.25221 6.47379 7.15939 7.47712 8.05646 8.65544 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.008245 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.144230 B = 3395.025718 C = 3744.239395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.457 5.457 3 C -0.348 4.348 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.890 5.890 7 Si 0.985 3.015 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.277 1.277 11 C 0.466 3.534 12 O -0.635 6.635 13 C -0.182 4.182 14 H 0.133 0.867 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.104 4.104 18 C 0.053 3.947 19 O -0.394 6.394 20 C 0.074 3.926 21 C -0.122 4.122 22 H 0.038 0.962 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.274 0.726 26 H 0.135 0.865 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.087 0.913 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -10.641 1.008 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.174 5.174 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.202 4.202 6 N -0.529 5.529 7 Si 0.808 3.192 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.203 1.203 11 C 0.257 3.743 12 O -0.523 6.523 13 C -0.203 4.203 14 H 0.151 0.849 15 C -0.168 4.168 16 C -0.098 4.098 17 C -0.142 4.142 18 C -0.023 4.023 19 O -0.313 6.313 20 C -0.003 4.003 21 C -0.159 4.159 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.153 0.847 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.274 -10.515 1.275 11.832 hybrid contribution 0.620 1.496 -0.477 1.688 sum -4.654 -9.018 0.799 10.180 Atomic orbital electron populations 1.21400 0.79527 1.00289 1.00428 1.43759 1.06612 1.04591 1.62479 1.19555 0.97127 0.85091 1.45788 0.91190 1.25987 0.96970 1.02480 0.94731 1.70100 1.18478 1.30030 1.34241 0.85132 0.78055 0.77062 0.78914 1.19349 1.19322 1.20281 1.19962 0.87207 0.85297 0.81842 1.90445 1.16084 1.87909 1.57910 1.22338 1.02508 0.90248 1.05156 0.84912 1.23028 0.98517 0.95772 0.99444 1.21497 0.99581 1.00269 0.88407 1.21853 0.93467 0.98285 1.00559 1.22855 0.92941 0.98368 0.88135 1.87776 1.41150 1.67532 1.34853 1.22385 0.87931 0.91367 0.98627 1.21787 0.97812 1.00478 0.95848 0.94305 0.92463 0.91752 0.91654 0.84719 0.90156 0.88092 0.88749 0.85868 0.94146 0.88583 0.95715 0.89409 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.70 8.52 127.77 1.09 6.79 16 2 N -0.46 -24.09 3.02 -658.89 -1.99 -26.08 16 3 C -0.35 -20.17 9.34 84.04 0.78 -19.38 16 4 H 0.07 4.36 7.37 -2.91 -0.02 4.34 16 5 C 0.00 0.03 4.98 84.93 0.42 0.46 16 6 N -0.89 -47.46 10.73 21.66 0.23 -47.23 16 7 Si 0.98 42.95 29.59 68.60 2.03 44.98 16 8 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 C 0.47 23.33 6.27 87.66 0.55 23.88 16 12 O -0.63 -36.67 14.80 -3.06 -0.05 -36.71 16 13 C -0.18 -6.62 4.98 -11.61 -0.06 -6.68 16 14 H 0.13 4.14 6.47 -2.38 -0.02 4.12 16 15 C -0.13 -3.99 9.52 30.51 0.29 -3.70 16 16 C -0.10 -3.01 2.03 -52.21 -0.11 -3.12 16 17 C -0.10 -2.36 5.92 30.79 0.18 -2.18 16 18 C 0.05 1.35 6.85 72.09 0.49 1.84 16 19 O -0.39 -12.63 10.69 -148.98 -1.59 -14.22 16 20 C 0.07 2.66 6.85 72.09 0.49 3.15 16 21 C -0.12 -4.35 5.58 30.79 0.17 -4.18 16 22 H 0.04 1.81 7.81 -2.38 -0.02 1.79 16 23 H 0.06 2.73 6.68 -2.39 -0.02 2.71 16 24 H 0.06 2.33 6.07 -2.39 -0.01 2.32 16 25 H 0.27 13.69 8.31 -92.71 -0.77 12.91 16 26 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.08 2.88 7.67 -2.39 -0.02 2.86 16 28 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.05 2.27 6.06 -2.38 -0.01 2.26 16 Total: -1.00 -68.74 282.49 4.02 -64.71 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.08 Total: 17.68 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.31 Total: -3.13 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.76 Total: -73.31 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -1.64 Total: -50.94 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.74 4.02 -64.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530667786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.216 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds