Wall clock time and date at job start Sun Mar 29 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47391 * 2 1 4 4 H 1.08998 * 109.46880 * 54.49094 * 3 2 1 5 5 C 1.50701 * 109.47105 * 174.49399 * 3 2 1 6 6 H 1.07995 * 119.99841 * 119.99987 * 5 3 2 7 7 C 1.37880 * 119.99894 * 299.99255 * 5 3 2 8 8 N 1.31515 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00031 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46714 * 90.00311 * 9 7 5 11 11 H 1.48497 * 109.47290 * 210.00286 * 9 7 5 12 12 H 1.48497 * 109.46818 * 330.00789 * 9 7 5 13 13 N 1.46892 * 109.46679 * 294.49065 * 3 2 1 14 14 C 1.46906 * 111.00134 * 152.94547 * 13 3 2 15 15 H 1.09000 * 109.46575 * 33.64447 * 14 13 3 16 16 C 1.52997 * 109.46867 * 273.65199 * 14 13 3 17 17 C 1.50693 * 109.47494 * 153.64860 * 14 13 3 18 18 N 1.29950 * 126.29073 * 45.02543 * 17 14 13 19 19 O 1.21292 * 110.25203 * 179.97438 * 18 17 14 20 20 C 1.33646 * 109.81491 * 0.02562 * 19 18 17 21 21 C 1.50697 * 126.55034 * 179.97438 * 20 19 18 22 22 N 1.31133 * 106.89499 * 359.76560 * 20 19 18 23 23 H 1.08998 * 109.46957 * 180.80010 * 1 2 3 24 24 H 1.09004 * 109.46983 * 300.79764 * 1 2 3 25 25 H 1.08999 * 109.46787 * 60.80113 * 1 2 3 26 26 H 1.09004 * 109.47294 * 119.99806 * 2 1 3 27 27 H 1.09003 * 109.47359 * 239.99380 * 2 1 3 28 28 H 0.97009 * 119.99400 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00695 * 28.99085 * 13 3 2 30 30 H 1.08998 * 109.47821 * 64.80720 * 16 14 13 31 31 H 1.09001 * 109.46957 * 184.81008 * 16 14 13 32 32 H 1.09006 * 109.47191 * 304.80712 * 16 14 13 33 33 H 1.09001 * 109.47553 * 359.96972 * 21 20 19 34 34 H 1.08995 * 109.46905 * 119.97428 * 21 20 19 35 35 H 1.09003 * 109.47072 * 239.97167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5984 1.9840 0.8365 5 6 3.5409 1.4446 0.1363 6 1 4.1526 1.8868 -0.6360 7 6 4.1330 0.8820 1.2472 8 7 3.3880 0.3432 2.1875 9 14 5.9933 0.8853 1.4166 10 1 6.4241 2.1203 2.1196 11 1 6.4214 -0.3034 2.1969 12 1 6.6131 0.8417 0.0678 13 7 1.6620 2.0954 -1.2603 14 6 1.5343 3.5481 -1.0831 15 1 2.2602 3.8892 -0.3450 16 6 0.1212 3.8806 -0.5999 17 6 1.7914 4.2392 -2.3973 18 7 1.3144 3.8920 -3.5551 19 8 1.7075 4.6508 -4.4158 20 6 2.4972 5.5821 -3.8725 21 6 3.1873 6.7082 -4.5983 22 7 2.5531 5.3314 -2.5866 23 1 -0.3633 -1.0276 0.0144 24 1 -0.3633 0.5262 0.8828 25 1 -0.3633 0.5013 -0.8971 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.8046 -0.0529 2.9689 29 1 0.8109 1.7003 -1.6313 30 1 -0.0349 3.4516 0.3898 31 1 -0.0006 4.9626 -0.5502 32 1 -0.6079 3.4645 -1.2953 33 1 2.9472 6.6573 -5.6603 34 1 2.8486 7.6622 -4.1944 35 1 4.2655 6.6195 -4.4650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565175233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:33 Heat of formation + Delta-G solvation = 58.863255 kcal Electronic energy + Delta-G solvation = -17396.692073 eV Core-core repulsion = 14625.908885 eV Total energy + Delta-G solvation = -2770.783188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.19784 -37.30146 -35.42322 -33.84020 -32.38667 -31.37498 -28.74203 -28.55088 -26.14123 -24.52264 -22.96761 -22.62391 -20.10873 -19.61836 -17.80726 -17.11308 -16.20860 -15.10616 -14.96400 -14.44108 -13.93584 -13.72894 -13.46806 -13.12793 -12.86161 -12.61335 -12.49270 -11.89923 -11.77340 -11.53906 -11.17371 -11.14911 -10.87638 -10.81466 -10.65187 -10.54680 -9.96319 -9.83567 -9.67449 -9.43956 -9.10258 -8.35800 -7.34804 -5.97335 -4.01351 1.50396 2.65779 3.11560 3.33377 3.39581 3.45163 3.92318 4.45642 4.52947 5.06762 5.18112 5.21041 5.31162 5.41231 5.57009 5.58256 5.72828 6.00791 6.13473 6.15931 6.16192 6.29309 6.32074 6.42853 6.58522 6.83274 7.05086 7.12759 7.43148 7.75801 7.90929 8.19851 8.36221 8.60351 8.69584 9.06356 9.63754 11.07922 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.007416 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.357867 B = 3774.780638 C = 4652.843157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.176 3.824 15 H 0.112 0.888 16 C -0.172 4.172 17 C 0.204 3.796 18 N -0.376 5.376 19 O 0.067 5.933 20 C 0.157 3.843 21 C -0.056 4.056 22 N -0.479 5.479 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.326 0.674 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 9.749 -9.515 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.063 3.937 15 H 0.130 0.870 16 C -0.232 4.232 17 C -0.070 4.070 18 N -0.084 5.084 19 O 0.009 5.991 20 C -0.064 4.064 21 C -0.114 4.114 22 N -0.214 5.214 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.683 9.042 -9.264 13.459 hybrid contribution 0.280 0.067 0.519 0.594 sum -3.403 9.108 -8.745 13.077 Atomic orbital electron populations 1.21891 0.99510 0.99722 0.99683 1.21779 0.91310 1.00130 1.03236 1.19209 0.95563 0.90047 0.83742 0.97405 1.21209 0.91168 1.36617 1.04348 0.92177 1.24936 0.98148 0.95522 0.95779 1.69869 1.34707 1.39408 1.09581 0.86543 0.85758 0.77369 0.78035 1.20786 1.21321 1.19980 1.60546 1.37967 0.99572 1.32824 1.19705 0.96899 0.90008 0.87132 0.86976 1.22467 0.96762 1.01663 1.02275 1.26067 0.93090 0.91195 0.96663 1.74566 1.21322 1.13114 0.99426 1.85275 1.48336 1.30550 1.34931 1.28740 0.94118 0.94572 0.88974 1.20270 1.00196 0.91388 0.99545 1.71851 1.20544 1.15196 1.13801 0.94306 0.93764 0.94627 0.88005 0.94015 0.93042 0.85532 0.90919 0.92634 0.92623 0.88954 0.88340 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.74 37.16 0.36 -2.56 16 2 C -0.13 -2.98 5.35 -26.73 -0.14 -3.12 16 3 C 0.22 5.49 1.82 -68.87 -0.13 5.37 16 4 H 0.01 0.22 7.25 -51.93 -0.38 -0.16 16 5 C -0.49 -13.82 8.61 -34.44 -0.30 -14.11 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.58 5.29 -17.82 -0.09 1.48 16 8 N -0.90 -25.37 11.29 55.43 0.63 -24.75 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.97 6.03 -102.18 -0.62 -15.59 16 14 C 0.18 3.53 2.93 -68.87 -0.20 3.33 16 15 H 0.11 2.49 7.70 -51.93 -0.40 2.09 16 16 C -0.17 -2.90 9.15 37.16 0.34 -2.56 16 17 C 0.20 3.96 7.06 -156.37 -1.10 2.85 16 18 N -0.38 -7.05 12.15 30.90 0.38 -6.67 16 19 O 0.07 1.06 11.31 18.10 0.20 1.26 16 20 C 0.16 2.20 8.51 -13.06 -0.11 2.09 16 21 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 22 N -0.48 -8.56 11.55 -9.87 -0.11 -8.68 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.63 6.49 -51.93 -0.34 0.30 16 26 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.76 6.16 -39.29 -0.24 6.52 16 30 H 0.07 1.23 7.61 -51.93 -0.40 0.84 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -31.01 294.47 -6.08 -37.09 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.98 Total: 3.38 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.00 Total: -7.27 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.27 Total: -55.69 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.01 -6.08 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.954 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds