Wall clock time and date at job start Sun Mar 29 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47391 * 2 1 4 4 H 1.08998 * 109.46880 * 54.49094 * 3 2 1 5 5 C 1.50701 * 109.47105 * 174.49399 * 3 2 1 6 6 H 1.07995 * 119.99841 * 119.99987 * 5 3 2 7 7 C 1.37880 * 119.99894 * 299.99255 * 5 3 2 8 8 N 1.31515 * 119.99762 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00031 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46714 * 90.00311 * 9 7 5 11 11 H 1.48497 * 109.47290 * 210.00286 * 9 7 5 12 12 H 1.48497 * 109.46818 * 330.00789 * 9 7 5 13 13 N 1.46892 * 109.46679 * 294.49065 * 3 2 1 14 14 C 1.46906 * 111.00134 * 152.94547 * 13 3 2 15 15 H 1.09000 * 109.46575 * 33.64447 * 14 13 3 16 16 C 1.52997 * 109.46867 * 273.65199 * 14 13 3 17 17 C 1.50693 * 109.47494 * 153.64860 * 14 13 3 18 18 N 1.29950 * 126.29073 * 45.02543 * 17 14 13 19 19 O 1.21292 * 110.25203 * 179.97438 * 18 17 14 20 20 C 1.33646 * 109.81491 * 0.02562 * 19 18 17 21 21 C 1.50697 * 126.55034 * 179.97438 * 20 19 18 22 22 N 1.31133 * 106.89499 * 359.76560 * 20 19 18 23 23 H 1.08998 * 109.46957 * 180.80010 * 1 2 3 24 24 H 1.09004 * 109.46983 * 300.79764 * 1 2 3 25 25 H 1.08999 * 109.46787 * 60.80113 * 1 2 3 26 26 H 1.09004 * 109.47294 * 119.99806 * 2 1 3 27 27 H 1.09003 * 109.47359 * 239.99380 * 2 1 3 28 28 H 0.97009 * 119.99400 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00695 * 28.99085 * 13 3 2 30 30 H 1.08998 * 109.47821 * 64.80720 * 16 14 13 31 31 H 1.09001 * 109.46957 * 184.81008 * 16 14 13 32 32 H 1.09006 * 109.47191 * 304.80712 * 16 14 13 33 33 H 1.09001 * 109.47553 * 359.96972 * 21 20 19 34 34 H 1.08995 * 109.46905 * 119.97428 * 21 20 19 35 35 H 1.09003 * 109.47072 * 239.97167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5984 1.9840 0.8365 5 6 3.5409 1.4446 0.1363 6 1 4.1526 1.8868 -0.6360 7 6 4.1330 0.8820 1.2472 8 7 3.3880 0.3432 2.1875 9 14 5.9933 0.8853 1.4166 10 1 6.4241 2.1203 2.1196 11 1 6.4214 -0.3034 2.1969 12 1 6.6131 0.8417 0.0678 13 7 1.6620 2.0954 -1.2603 14 6 1.5343 3.5481 -1.0831 15 1 2.2602 3.8892 -0.3450 16 6 0.1212 3.8806 -0.5999 17 6 1.7914 4.2392 -2.3973 18 7 1.3144 3.8920 -3.5551 19 8 1.7075 4.6508 -4.4158 20 6 2.4972 5.5821 -3.8725 21 6 3.1873 6.7082 -4.5983 22 7 2.5531 5.3314 -2.5866 23 1 -0.3633 -1.0276 0.0144 24 1 -0.3633 0.5262 0.8828 25 1 -0.3633 0.5013 -0.8971 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.8046 -0.0529 2.9689 29 1 0.8109 1.7003 -1.6313 30 1 -0.0349 3.4516 0.3898 31 1 -0.0006 4.9626 -0.5502 32 1 -0.6079 3.4645 -1.2953 33 1 2.9472 6.6573 -5.6603 34 1 2.8486 7.6622 -4.1944 35 1 4.2655 6.6195 -4.4650 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565175233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:33 Heat of formation + Delta-G solvation = 35.930343 kcal Electronic energy + Delta-G solvation = -17397.686519 eV Core-core repulsion = 14625.908885 eV Total energy + Delta-G solvation = -2771.777634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.51962 -39.00114 -36.86668 -35.37343 -34.01910 -33.07836 -30.31848 -29.58196 -28.09441 -26.00404 -24.65315 -24.08294 -21.61486 -21.40755 -19.12144 -18.50464 -18.29265 -16.88182 -16.57672 -16.00947 -15.43471 -15.32448 -14.52318 -14.41293 -14.14085 -14.04865 -13.92353 -13.51952 -13.18695 -12.98647 -12.87846 -12.74126 -12.60759 -12.52257 -12.27471 -12.00975 -11.96237 -11.64550 -11.51758 -11.12675 -10.72002 -10.46632 -9.16782 -8.10165 -6.21856 0.30739 1.28685 1.38244 1.39135 1.49872 2.06944 2.41038 2.66524 3.14922 3.18478 3.64585 3.97528 4.10019 4.29342 4.48408 4.53973 4.55549 4.65647 4.68623 4.69875 4.75184 4.84222 4.97631 5.07685 5.14881 5.19326 5.25662 5.31895 5.54701 5.70612 5.84103 6.28351 6.39794 6.85247 6.88932 7.32699 7.46648 8.92820 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.007416 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.357867 B = 3774.780638 C = 4652.843157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.015 1.015 5 C -0.516 4.516 6 H 0.039 0.961 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.682 5.682 14 C 0.176 3.824 15 H 0.081 0.919 16 C -0.159 4.159 17 C 0.183 3.817 18 N -0.393 5.393 19 O 0.072 5.928 20 C 0.177 3.823 21 C -0.055 4.055 22 N -0.516 5.516 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.334 0.666 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 10.803 -10.853 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.122 3.878 4 H 0.003 0.997 5 C -0.555 4.555 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.203 1.203 13 N -0.315 5.315 14 C 0.064 3.936 15 H 0.099 0.901 16 C -0.219 4.219 17 C -0.090 4.090 18 N -0.102 5.102 19 O 0.014 5.986 20 C -0.042 4.042 21 C -0.113 4.113 22 N -0.251 5.251 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.746 10.110 -10.602 15.121 hybrid contribution 0.340 -0.166 0.842 0.923 sum -3.406 9.944 -9.760 14.344 Atomic orbital electron populations 1.21753 0.96048 1.01354 1.00490 1.21606 0.94410 0.98683 1.01277 1.18952 0.93903 0.90763 0.84133 0.99709 1.21399 0.92848 1.37008 1.04203 0.94273 1.25595 1.02117 0.95149 0.95465 1.69972 1.36126 1.39520 1.09786 0.85650 0.80998 0.77739 0.77796 1.20190 1.20322 1.20250 1.60405 1.38694 1.00904 1.31450 1.19565 0.97942 0.88682 0.87431 0.90055 1.22325 0.94813 1.02738 1.01998 1.25876 0.94411 0.92217 0.96529 1.74524 1.22124 1.14150 0.99381 1.85231 1.48602 1.30698 1.34113 1.29951 0.91972 0.94181 0.88137 1.20733 1.00129 0.89584 1.00861 1.71838 1.21679 1.15531 1.16027 0.92236 0.93827 0.92905 0.90861 0.94914 0.92849 0.84666 0.91393 0.91067 0.91517 0.85700 0.86106 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.74 71.98 0.70 -4.55 16 2 C -0.12 -5.80 5.35 30.59 0.16 -5.64 16 3 C 0.23 11.75 1.82 44.17 0.08 11.83 16 4 H -0.01 -0.80 7.25 -2.39 -0.02 -0.82 16 5 C -0.52 -29.70 8.61 25.60 0.22 -29.48 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.02 0.88 5.29 84.66 0.45 1.32 16 8 N -0.91 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.68 -30.70 6.03 -477.18 -2.88 -33.58 16 14 C 0.18 7.25 2.93 44.16 0.13 7.38 16 15 H 0.08 3.80 7.70 -2.39 -0.02 3.78 16 16 C -0.16 -5.32 9.15 71.98 0.66 -4.66 16 17 C 0.18 7.12 7.06 138.46 0.98 8.10 16 18 N -0.39 -14.48 12.15 -60.33 -0.73 -15.21 16 19 O 0.07 2.18 11.31 74.82 0.85 3.02 16 20 C 0.18 4.62 8.51 88.38 0.75 5.38 16 21 C -0.06 -0.63 10.51 71.23 0.75 0.12 16 22 N -0.52 -18.17 11.55 -303.20 -3.50 -21.68 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.80 6.49 -2.39 -0.02 1.78 16 26 H 0.07 3.94 5.94 -2.38 -0.01 3.93 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.33 13.81 6.16 -89.69 -0.55 13.25 16 30 H 0.07 2.31 7.61 -2.39 -0.02 2.29 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.07 8.04 -2.38 -0.02 2.05 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.61 294.47 1.42 -67.20 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.54 Total: 15.54 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.88 Total: -10.20 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.87 Total: -122.82 kcal Atomic # 8 Polarization: 2.18 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.61 1.42 -67.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.127 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds