Wall clock time and date at job start Sun Mar 29 2020 22:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 H 1.09004 * 109.47144 * 174.23428 * 3 2 1 5 5 C 1.50698 * 109.47356 * 54.22961 * 3 2 1 6 6 H 1.08000 * 119.99761 * 240.00258 * 5 3 2 7 7 C 1.37876 * 120.00087 * 60.00144 * 5 3 2 8 8 N 1.31510 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46806 * 89.99836 * 9 7 5 11 11 H 1.48498 * 109.47178 * 209.99938 * 9 7 5 12 12 H 1.48501 * 109.46558 * 329.99987 * 9 7 5 13 13 N 1.46903 * 109.47011 * 294.22820 * 3 2 1 14 14 C 1.46895 * 110.99978 * 274.93429 * 13 3 2 15 15 H 1.09001 * 109.47744 * 35.05359 * 14 13 3 16 16 C 1.52998 * 109.47131 * 275.05455 * 14 13 3 17 17 C 1.50705 * 109.47382 * 155.05622 * 14 13 3 18 18 N 1.29946 * 126.28355 * 45.01975 * 17 14 13 19 19 O 1.21303 * 110.24606 * 179.97438 * 18 17 14 20 20 C 1.33635 * 109.81407 * 359.97438 * 19 18 17 21 21 C 1.50705 * 126.55220 * 179.97438 * 20 19 18 22 22 N 1.31136 * 106.89853 * 359.77005 * 20 19 18 23 23 H 1.08993 * 109.47298 * 58.72403 * 1 2 3 24 24 H 1.09000 * 109.47438 * 298.71904 * 1 2 3 25 25 H 1.09004 * 109.46777 * 178.72114 * 1 2 3 26 26 H 1.09002 * 109.47390 * 119.99323 * 2 1 3 27 27 H 1.08999 * 109.47551 * 239.99816 * 2 1 3 28 28 H 0.97005 * 119.99902 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99489 * 38.88521 * 13 3 2 30 30 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 31 31 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 32 32 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 33 33 H 1.08997 * 109.46837 * 359.97438 * 21 20 19 34 34 H 1.09008 * 109.46609 * 119.97441 * 21 20 19 35 35 H 1.08998 * 109.47299 * 239.97874 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4244 2.1930 1.1528 6 1 0.8170 3.0663 0.9658 7 6 1.6365 1.7648 2.4461 8 7 2.3765 0.7017 2.6737 9 14 0.8729 2.6947 3.8750 10 1 -0.4684 2.1308 4.1721 11 1 1.7416 2.5628 5.0721 12 1 0.7385 4.1294 3.5164 13 7 1.6673 2.0936 -1.2630 14 6 2.6561 1.8122 -2.3122 15 1 3.0425 0.8008 -2.1856 16 6 3.8076 2.8144 -2.2098 17 6 2.0025 1.9345 -3.6646 18 7 1.2074 2.8869 -4.0510 19 8 0.8498 2.6971 -5.1945 20 6 1.3999 1.5718 -5.6603 21 6 1.2101 0.9817 -7.0339 22 7 2.1401 1.0815 -4.6952 23 1 -0.3633 0.5335 -0.8783 24 1 -0.3634 0.4938 0.9012 25 1 -0.3633 -1.0275 -0.0229 26 1 1.8933 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 2.5254 0.4002 3.5836 29 1 0.7421 1.8152 -1.5540 30 1 4.2804 2.7260 -1.2317 31 1 4.5412 2.6060 -2.9885 32 1 3.4213 3.8258 -2.3365 33 1 0.5413 1.6180 -7.6135 34 1 2.1748 0.9148 -7.5371 35 1 0.7768 -0.0145 -6.9447 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565175257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:38 Heat of formation + Delta-G solvation = 39.307762 kcal Electronic energy + Delta-G solvation = -17425.210395 eV Core-core repulsion = 14653.579217 eV Total energy + Delta-G solvation = -2771.631178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.63855 -39.09535 -36.96297 -35.43154 -33.95611 -32.86251 -30.23696 -29.64104 -28.10514 -26.00639 -25.07603 -24.16930 -21.94399 -20.73036 -19.20655 -18.81721 -18.01712 -16.98110 -16.82903 -15.83064 -15.46746 -14.94755 -14.81772 -14.46876 -14.15741 -14.09768 -13.92069 -13.58205 -13.13120 -12.94747 -12.82653 -12.64658 -12.51367 -12.47783 -12.36347 -12.11035 -11.86369 -11.78366 -11.50432 -11.04107 -10.82110 -10.44728 -9.13377 -8.07402 -6.15253 0.23191 1.16244 1.42536 1.44251 1.54455 2.01048 2.43211 2.58111 3.01294 3.22026 3.56920 3.90933 4.24671 4.29252 4.45738 4.51409 4.55570 4.64946 4.65457 4.67939 4.74768 4.84622 5.02642 5.03401 5.16343 5.20986 5.29497 5.34685 5.60493 5.68916 5.78329 6.25134 6.55808 6.62635 6.93557 7.25261 7.51724 8.98616 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040914 B = 0.005763 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.200231 B = 4857.277833 C = 4958.221545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C 0.223 3.777 4 H 0.011 0.989 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.173 3.827 15 H 0.057 0.943 16 C -0.122 4.122 17 C 0.161 3.839 18 N -0.386 5.386 19 O 0.079 5.921 20 C 0.180 3.820 21 C -0.056 4.056 22 N -0.510 5.510 23 H 0.036 0.964 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 -0.758 -17.941 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.305 5.305 14 C 0.062 3.938 15 H 0.075 0.925 16 C -0.181 4.181 17 C -0.112 4.112 18 N -0.093 5.093 19 O 0.018 5.982 20 C -0.039 4.039 21 C -0.114 4.114 22 N -0.244 5.244 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.508 0.131 -16.913 16.981 hybrid contribution -0.412 -0.619 0.879 1.151 sum -1.920 -0.488 -16.034 16.156 Atomic orbital electron populations 1.21431 0.96188 0.99332 1.00501 1.21979 0.96328 1.00085 0.99503 1.19062 0.94518 0.89292 0.85687 0.97087 1.21172 1.30595 1.11423 0.90746 0.93247 1.25541 0.95867 0.95887 1.00776 1.69995 1.39858 1.25082 1.20873 0.85647 0.78334 0.79116 0.79065 1.20225 1.21000 1.19887 1.60939 1.03747 1.62983 1.02783 1.19764 0.93097 0.99061 0.81911 0.92535 1.21674 0.95903 0.98370 1.02149 1.25874 0.97703 0.88660 0.98940 1.74690 1.16503 1.23178 0.94893 1.85288 1.54484 1.38289 1.20158 1.30011 0.89046 0.84456 1.00399 1.20768 1.06918 1.02273 0.81449 1.71867 1.23508 1.28590 1.00465 0.94456 0.93536 0.93596 0.91278 0.95982 0.93055 0.85289 0.92056 0.91084 0.92546 0.85759 0.86173 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.39 71.98 0.68 -4.45 16 2 C -0.14 -6.71 5.48 30.59 0.17 -6.54 16 3 C 0.22 11.33 2.14 44.17 0.09 11.42 16 4 H 0.01 0.63 7.11 -2.38 -0.02 0.61 16 5 C -0.50 -27.71 7.35 25.60 0.19 -27.52 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.02 0.98 5.23 84.66 0.44 1.43 16 8 N -0.92 -52.29 11.39 21.45 0.24 -52.05 16 9 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.67 -30.33 6.03 -477.15 -2.88 -33.21 16 14 C 0.17 6.86 2.95 44.17 0.13 6.99 16 15 H 0.06 2.33 7.10 -2.39 -0.02 2.31 16 16 C -0.12 -4.45 9.38 71.98 0.68 -3.77 16 17 C 0.16 5.81 6.71 138.47 0.93 6.74 16 18 N -0.39 -13.64 12.15 -60.33 -0.73 -14.37 16 19 O 0.08 2.19 11.31 74.90 0.85 3.04 16 20 C 0.18 4.11 8.51 88.38 0.75 4.86 16 21 C -0.06 -0.47 10.51 71.24 0.75 0.27 16 22 N -0.51 -15.86 11.55 -303.21 -3.50 -19.37 16 23 H 0.04 1.52 6.42 -2.39 -0.02 1.50 16 24 H 0.05 2.22 7.05 -2.39 -0.02 2.20 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 3.71 6.25 -2.39 -0.01 3.69 16 27 H 0.02 0.98 7.37 -2.39 -0.02 0.96 16 28 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 29 H 0.33 14.75 6.21 -89.69 -0.56 14.19 16 30 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.12 0.36 8.14 -2.39 -0.02 0.35 16 34 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -65.90 290.85 1.35 -64.56 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.54 Total: 15.70 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.80 Total: -10.58 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -6.87 Total: -119.00 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.85 Total: 3.04 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -65.90 1.35 -64.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.865 kcal (2) G-P(sol) polarization free energy of solvation -65.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds