Wall clock time and date at job start Sun Mar 29 2020 22:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47076 * 2 1 4 4 N 1.30275 * 126.28293 * 89.68482 * 3 2 1 5 5 N 1.28666 * 109.37724 * 179.82832 * 4 3 2 6 6 C 1.30274 * 109.38424 * 0.44872 * 5 4 3 7 7 C 1.50694 * 126.28461 * 179.73329 * 6 5 4 8 8 N 1.46906 * 109.47386 * 89.99546 * 7 6 5 9 9 C 1.46895 * 111.00049 * 175.53437 * 8 7 6 10 10 H 1.09001 * 109.47278 * 325.93655 * 9 8 7 11 11 C 1.50705 * 109.47317 * 205.93382 * 9 8 7 12 12 H 1.08003 * 119.99743 * 0.02562 * 11 9 8 13 13 C 1.37875 * 120.00307 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99924 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99962 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47238 * 60.00333 * 15 13 11 17 17 H 1.48508 * 109.46850 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47346 * 300.00016 * 15 13 11 19 19 C 1.53004 * 109.47208 * 85.93567 * 9 8 7 20 20 C 1.52997 * 109.46956 * 59.82339 * 19 9 8 21 21 O 1.34363 * 107.43427 * 359.72556 * 6 5 4 22 22 H 1.08999 * 109.47080 * 60.00297 * 1 2 3 23 23 H 1.09006 * 109.47291 * 299.99912 * 1 2 3 24 24 H 1.09005 * 109.46905 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47080 * 119.99703 * 2 1 3 26 26 H 1.08993 * 109.47317 * 239.99858 * 2 1 3 27 27 H 1.08998 * 109.47113 * 209.99474 * 7 6 5 28 28 H 1.08995 * 109.47027 * 329.99733 * 7 6 5 29 29 H 1.00896 * 110.99668 * 51.58369 * 8 7 6 30 30 H 0.96999 * 120.00123 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47069 * 179.82676 * 19 9 8 32 32 H 1.09003 * 109.46713 * 299.82318 * 19 9 8 33 33 H 1.09002 * 109.47143 * 175.59374 * 20 19 9 34 34 H 1.09002 * 109.47362 * 295.59209 * 20 19 9 35 35 H 1.08998 * 109.47378 * 55.59251 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2839 2.1496 1.0501 5 7 2.6996 3.3084 0.6760 6 6 2.7184 3.3615 -0.6255 7 6 3.1358 4.5421 -1.4639 8 7 4.5773 4.4641 -1.7363 9 6 5.0013 5.5419 -2.6399 10 1 4.2018 5.7576 -3.3486 11 6 6.2354 5.1119 -3.3904 12 1 6.6618 4.1354 -3.2140 13 6 6.8202 5.9650 -4.3020 14 7 6.3013 7.1544 -4.5163 15 14 8.3503 5.4322 -5.2317 16 1 8.0488 4.2129 -6.0237 17 1 8.7789 6.5218 -6.1452 18 1 9.4392 5.1383 -4.2657 19 6 5.3125 6.7984 -1.8242 20 6 6.4317 6.4944 -0.8263 21 8 2.2974 2.1704 -1.0832 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.5870 4.5311 -2.4056 28 1 2.9170 5.4648 -0.9266 29 1 4.8263 3.5604 -2.1096 30 1 6.7125 7.7545 -5.1580 31 1 5.6301 7.5972 -2.4943 32 1 4.4190 7.1112 -1.2838 33 1 6.7073 7.4083 -0.2999 34 1 6.0860 5.7514 -0.1077 35 1 7.2994 6.1071 -1.3604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565175402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:38 Heat of formation + Delta-G solvation = 2.537965 kcal Electronic energy + Delta-G solvation = -16944.939844 eV Core-core repulsion = 14171.714208 eV Total energy + Delta-G solvation = -2773.225636 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.28802 -38.35652 -37.24256 -35.64352 -34.62820 -32.89313 -31.10855 -28.74079 -26.72932 -25.52889 -25.03805 -23.45975 -22.80812 -21.03998 -18.74029 -18.44247 -17.96087 -17.02826 -16.39942 -16.13986 -15.75151 -15.34304 -15.08152 -14.66552 -14.13150 -13.74407 -13.71523 -13.48253 -13.39152 -12.98499 -12.81798 -12.74981 -12.70773 -12.42822 -12.28626 -12.03690 -11.90292 -11.65575 -11.33795 -10.86329 -10.61306 -10.51849 -9.21657 -8.10479 -6.22512 0.08056 1.19868 1.29953 1.44239 1.45983 1.52642 2.42929 2.77802 3.18937 3.37011 3.57192 3.83942 4.14394 4.19075 4.24721 4.33642 4.48150 4.55289 4.65876 4.78912 4.80148 4.92421 4.94394 5.00840 5.26221 5.27016 5.36955 5.52009 5.69140 5.77807 5.85276 6.24870 6.32976 6.61264 6.92268 7.23832 7.45659 8.94304 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036106 B = 0.005122 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.304048 B = 5464.891375 C = 5863.375098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.168 3.832 4 N -0.323 5.323 5 N -0.303 5.303 6 C 0.177 3.823 7 C 0.159 3.841 8 N -0.676 5.676 9 C 0.224 3.776 10 H -0.016 1.016 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.023 3.977 14 N -0.912 5.912 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.102 4.102 20 C -0.110 4.110 21 O -0.231 6.231 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.128 0.872 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.335 0.665 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -12.183 4.946 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.043 4.043 4 N -0.169 5.169 5 N -0.150 5.150 6 C -0.035 4.035 7 C 0.029 3.971 8 N -0.309 5.309 9 C 0.117 3.883 10 H 0.002 0.998 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.177 4.177 14 N -0.551 5.551 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.141 4.141 20 C -0.167 4.167 21 O -0.110 6.110 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.124 0.876 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.376 -11.299 6.652 16.119 hybrid contribution 0.428 -0.413 -2.554 2.622 sum -8.948 -11.712 4.098 15.298 Atomic orbital electron populations 1.21803 0.91535 1.04867 1.02258 1.20553 0.97870 0.80393 1.07589 1.29117 0.97340 0.99057 0.78835 1.74307 1.16798 0.98814 1.27008 1.74341 1.16818 1.13653 1.10151 1.28127 0.96980 0.87007 0.91420 1.20449 0.90997 0.89481 0.96216 1.60744 1.10654 1.07740 1.51752 1.19022 0.93751 0.88025 0.87527 0.99807 1.21341 1.11948 1.01458 1.21887 0.92575 1.25541 0.99820 0.94877 0.97476 1.69982 1.41527 1.08290 1.35292 0.85688 0.80123 0.77798 0.78469 1.19741 1.21089 1.20016 1.21370 0.96482 0.99269 0.96930 1.21322 0.98632 0.98827 0.97926 1.84809 1.63912 1.23366 1.38936 0.92714 0.92707 0.87581 0.85443 0.86292 0.91398 0.86731 0.84744 0.92840 0.91744 0.95427 0.94805 0.93517 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.03 -0.37 6.56 29.85 0.20 -0.18 16 3 C 0.17 4.51 7.73 88.34 0.68 5.19 16 4 N -0.32 -10.86 12.22 -165.50 -2.02 -12.89 16 5 N -0.30 -11.36 12.22 -165.51 -2.02 -13.38 16 6 C 0.18 6.10 7.95 88.34 0.70 6.81 16 7 C 0.16 5.53 6.16 85.55 0.53 6.06 16 8 N -0.68 -27.65 5.64 -499.46 -2.82 -30.46 16 9 C 0.22 10.71 2.30 44.17 0.10 10.81 16 10 H -0.02 -0.80 7.71 -2.39 -0.02 -0.82 16 11 C -0.53 -27.43 7.26 25.60 0.19 -27.24 16 12 H 0.06 2.89 7.60 -2.91 -0.02 2.87 16 13 C 0.02 1.21 5.30 84.65 0.45 1.65 16 14 N -0.91 -50.26 11.32 21.45 0.24 -50.01 16 15 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 C -0.10 -4.79 5.59 30.59 0.17 -4.62 16 20 C -0.11 -4.86 9.52 71.98 0.69 -4.17 16 21 O -0.23 -7.11 10.87 -3.66 -0.04 -7.15 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.11 0.63 8.14 -2.38 -0.02 0.62 16 25 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 2.21 7.94 -2.39 -0.02 2.19 16 28 H 0.11 3.91 7.61 -2.39 -0.02 3.89 16 29 H 0.34 13.63 8.13 -89.70 -0.73 12.90 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.06 3.39 6.06 -2.39 -0.01 3.37 16 32 H 0.03 1.18 7.61 -2.39 -0.02 1.16 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 2.01 7.74 -2.39 -0.02 1.99 16 35 H 0.04 1.74 7.07 -2.39 -0.02 1.72 16 Total: -1.00 -62.23 296.05 0.14 -62.09 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.36 Total: 14.29 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.41 Total: -6.70 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -6.62 Total: -106.75 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.04 Total: -7.15 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -62.23 0.14 -62.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565175402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.626 kcal (2) G-P(sol) polarization free energy of solvation -62.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds